JSON
AusARG ONT PromethION 102.100.100/349777 PAF09661
Data and Resources
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350785_PAF09661_AusARG_Ramaciott ... Access denied TAR
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350785_PAF09661_AusARG_Ramaciott ... Access denied TAR
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350785_PAF09661_AusARG_Ramaciott ... Access denied TAR
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350785_PAF09661_AusARG_Ramaciott ... Access denied TAR
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350785_PAF09661_AusARG_Ramaciott ... Access denied TAR
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350785_PAF09661_AusARG_Ramaciott ... Access denied TAR
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350785_AusARG_RamaciottiGarvan_P ... Access denied XLSX
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| Sequence Data Type | ont-promethion |
| access_rights | |
| ala_species_name | |
| ala_specimen_url | |
| analysis_software | MinKNOW 20.06.9, MinKNOW Core 4.0.3, Bream 6.0.7, Guppy 4.0.11 |
| analysis_software_version | MinKNOW 20.06.9, MinKNOW Core 4.0.3, Bream 6.0.7, Guppy 4.0.11 |
| ancillary_notes | |
| archive_ingestion_date | 2021-03-29 |
| associated_media | |
| ausarg_project | |
| barcode_id | |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1057/20210324_AusARG_RamaciottiGarvan_PAF09661/ |
| birth_date | |
| cell_position | |
| cell_postion | 3G |
| certainty | |
| class | Reptilia |
| collection_date | |
| collection_method | |
| collector | |
| collector_sample_id | |
| common_name | Central bearded dragon |
| contextual_data_submission_date | |
| coord_uncertainty_metres | |
| country | |
| data_context | Reference Genome |
| data_custodian | Arthur Georges |
| data_generated | 2021-03-29 |
| data_type | ONT-promethion |
| dataset_id | 102.100.100/351763 |
| dataset_url | |
| date_of_transfer | 2021-03-24 |
| death_date | |
| decimal_latitude_public | |
| decimal_longitude_public | |
| description | PromethION |
| dna_treatment | |
| experimental_design | ONT PromethION |
| facility_project_code | Pogona_ONT |
| facility_sample_id | PLPN162061 |
| family | Agamidae |
| fast5_compression | |
| file | |
| file_type | |
| flowcell_id | PAF09661 |
| flowcell_type | PromethION (R9.4) |
| folder_name | 20210324_AusARG_RamaciottiGarvan_PAF09661 |
| genotypic_sex | |
| genus | Pogona |
| habitat | |
| identified_by | |
| insert_size_range | |
| institution_name | |
| latitude | |
| library_comments | |
| library_construction_protocol | SQK-LSK109 |
| library_id | 102.100.100/350785 |
| library_index_id | |
| library_index_sequence | |
| library_layout | |
| library_location | BPA |
| library_ng_ul | |
| library_oligo_sequence | |
| library_pcr_cycles | |
| library_pcr_reps | |
| library_prep_date | 2020-08-18 |
| library_prepared_by | Jill H. |
| library_selection | |
| library_source | |
| library_status | genomic DNA |
| library_strategy | |
| library_type | Ligation |
| lifestage | |
| location_generalisation | |
| location_text | |
| longitude | |
| material_conc_ng_ul | |
| material_extracted_by | |
| material_extraction_date | |
| material_extraction_method | |
| material_extraction_type | |
| method_of_determination | |
| model_base_caller | |
| movie_length | |
| n_libraries_pooled | |
| order | Squamata |
| phenotypic_sex | |
| phylum | Chordata |
| prior_genetics | |
| sample_custodian | |
| sample_id | 102.100.100/349777 |
| sample_quality | |
| sample_submission_date | 2021-03-24 |
| sequence_length | |
| sequencing_facility | Ramaciotti/Garvan |
| sequencing_kit_chemistry_version | |
| sequencing_model | |
| sequencing_platform | ONT PromethION |
| source_population | |
| species | viticeps |
| species_name | |
| specimen_id | |
| specimen_id_description | |
| state_or_region | |
| subspecies | NA |
| taxon_id | 103695.0 |
| taxonomic_group | |
| ticket | BPAOPS-1057 |
| tissue_collection | |
| tissue_number | |
| tissue_preservation | |
| tissue_type | blood |
| type_status | |
| voucher_id | |
| voucher_number | |
| voucher_or_tissue_number | |
| wild_captive | |
| work_order | NA |