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AusARG ONT PromethION 102.100.100/349743 PAF14945

102.100.100/350778 Tiliqua rugosa, SAMAR71619 Australia South Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights No restrictions
ala_species_name
ala_specimen_url NA
analysis_software MinKNOW 20.06.9, MinKNOW Core 4.0.3, Bream 6.0.7, Guppy 4.0.11
analysis_software_version MinKNOW 20.06.9, MinKNOW Core 4.0.3, Bream 6.0.7, Guppy 4.0.11
ancillary_notes Animal was taken from bundey Bore Station homestead area and was put into captivity after the life in cold blood series in 2008. In regards to the common name - given this is a South Australian animal is common name is the sleepy lizard rather than shingleback or bobtail.
archive_ingestion_date 2021-03-04
associated_media TrG_genomeLizard1_ventral.jpg; TrG_genomeLizard1_WholeDorsal.jpg; TrG_genomeLizard2_ventral.jpg; TrG_genomeLizard1_Head.jpg; TrG_GenomeLizard_4March2020_Face.jpg
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1042/20210218_AusARG_RamaciottiGarvan_PAF14945/
birth_date
cell_position
cell_postion 3D
certainty certain
class Reptilia
collection_date
collection_method hand capture
collector Dale Burzacott
collector_sample_id NA
common_name shingleback/sleepy lizard/bobtail
contextual_data_submission_date
coord_uncertainty_metres unknown
country Australia
data_context Reference Genome
data_custodian Terry Bertozzi
data_generated 2021-03-04
data_type ONT-promethion
dataset_id 102.100.100/351755
dataset_url
date_of_transfer 2021-02-03
death_date 2020-03-04
description PromethION
dna_treatment
experimental_design ONT PromethION
facility_project_code
facility_sample_id PLPN170069-2
family Scincidae
file
flowcell_id PAF14945
flowcell_type FLO-PRO002
folder_name 20210218_AusARG_RamaciottiGarvan_PAF14945
genotypic_sex male
genus Tiliqua
habitat xeric shrubland biome
identified_by Mike Gardner
insert_size_range
institution_name South Australian Museum
latitude -33.886547
library_comments genomic DNA
library_construction_protocol ULK001
library_id 102.100.100/350778
library_index_id
library_index_sequence
library_location Garvan
library_ng_ul
library_oligo_sequence
library_pcr_cycles
library_pcr_reps
library_prep_date 2020-08-26
library_prepared_by Jill H.
library_status Data available
library_type Transposase
lifestage Adult organism
location_generalisation
location_text Bundey Bore Station homestead
longitude 139.355269
material_conc_ng_ul 15.6 -114
material_extracted_by Terry Bertozzi
material_extraction_date 2020-08-13
material_extraction_method Circulomics Nanobind Tissue big DNA kit
material_extraction_type DNA
method_of_determination dissection and sexing marker
movie_length
n_libraries_pooled
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics spleen transcriptome
sample_custodian Terry Bertozzi | Michael Gardner
sample_id 102.100.100/349743
sample_quality excellent
sample_submission_date 2021-02-03
sequence_length
sequencing_facility Ramaciotti/Garvan
sequencing_platform ONT PromethION
source_population NA
species rugosa
species_name Tiliqua rugosa
specimen_id SAMAR71619
specimen_id_description South Australian Museum
state_or_region South Australia
subspecies asper
taxon_id 8527.0
taxonomic_group lizard
ticket BPAOPS-1042
tissue_collection Australian Biological Tissue Collection
tissue_number ABTC151652
tissue_preservation liquid nitrogen | -80C
tissue_type muscle structure
type_status no
voucher_id
voucher_number
voucher_or_tissue_number SAMAR71619
wild_captive wild (captive since 2008)
work_order NA