JSON

AusARG ONT PromethION 102.100.100/349747 PAF30832

102.100.100/350765 Bassiana duperreyi, AA094425 Australia ACT

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type ont-promethion
access_rights No restrictions
ala_species_name
ala_specimen_url NA
analysis_software MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11
analysis_software_version MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11
ancillary_notes NA
archive_ingestion_date 2021-03-03
associated_media NA
ausarg_project
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1038/20210209_AusARG_RamaciottiGarvan_PAF30832/
birth_date
cell_position
cell_postion 3C
certainty High
class Reptilia
collection_date 2018-12-12
collection_method Field work
collector Duminda Dissanayake
collector_sample_id DDBD_364
common_name Eastern three-lined skink
contextual_data_submission_date
coord_uncertainty_metres 5.0
country Australia
data_context Reference Genome
data_custodian Arthur Georges
data_generated 2021-03-03
data_type ONT-promethion
dataset_id 102.100.100/351737
dataset_url
date_of_transfer 2021-02-15
death_date
decimal_latitude_public -35.52487778
decimal_longitude_public 148.7829583
description PromethION
dna_treatment
experimental_design ONT PromethION
facility_project_code Q0004734
facility_sample_id PLPN267158
family Scincidae
fast5_compression
file
file_type
flowcell_id PAF30832
flowcell_type PromethION (R9.4)
folder_name 20210209_AusARG_RamaciottiGarvan_PAF30832
genotypic_sex XY
genus Bassiana
habitat Alpine
identified_by Duminda Dissanayake
insert_size_range >60
institution_name University of Canberra
latitude -35.52487778
library_comments genomic DNA
library_construction_protocol LSK109
library_id 102.100.100/350765
library_index_id
library_index_sequence
library_layout
library_location BPA
library_ng_ul 350.0
library_oligo_sequence
library_pcr_cycles 0.0
library_pcr_reps 0.0
library_prep_date 2020-11-23
library_prepared_by Igor S.
library_selection
library_source
library_status Data available
library_strategy
library_type Ligation
lifestage adult
location_generalisation
location_text Mt Ginini
longitude 148.7829583
material_conc_ng_ul 217.0
material_extracted_by Duminda Dissanayake
material_extraction_date 2020-11-23
material_extraction_method DNA - Spooling technique
material_extraction_type DNA
method_of_determination PCR sex test
model_base_caller
movie_length
n_libraries_pooled 1
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics 10x genomics
sample_custodian Arthur Georges
sample_id 102.100.100/349747
sample_quality high
sample_submission_date 2021-02-15
sequence_length
sequencing_facility Ramaciotti/Garvan
sequencing_kit_chemistry_version
sequencing_model
sequencing_platform ONT PromethION
source_population Mt Ginini
species duperreyi
species_name Bassiana duperreyi
specimen_id DDBD_364
specimen_id_description University of Canberra
state_or_region ACT
subspecies NA
taxon_id 316450.0
taxonomic_group skink
ticket BPAOPS-1038
tissue_collection University of Canberra
tissue_number DDBD_364_A
tissue_preservation ethanol
tissue_type muscle - body
type_status NA
voucher_id
voucher_number
voucher_or_tissue_number AA094425
wild_captive wild-caught
work_order 13010.0