bpa-ausarg-illumina-fastq-353857-hf2mcdrxy

Emydura macquarii, ILLUMINA Illumina-shortread,

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
access_rights
ala_specimen_url
analysis_software Bcl2fastq2
analysis_software_version v2.20
ancillary_notes
associated_media
ausarg_project
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1130/20210824_AusARG_UNSW_HF2MCDRXY/
bioplatforms_dataset_id 102.100.100/351797
bioplatforms_library_id 102.100.100/353857
bioplatforms_sample_id 102.100.100/349826
birth_date
ccg_jira_ticket BPAOPS-1130
cell_postion n/a
certainty
class Reptilia
collection_date
collection_method
collector
collector_sample_id
common_name Murray River turtle
coord_uncertainty_metres
country
data_context Reference Genome
data_custodian Arthur Georges
data_generated True
data_type Illumina-shortread
dataset_id 102.100.100/351797
date_of_transfer 02/09/2021
date_of_transfer_to_archive 3/9/2021
death_date
decimal_latitude_public
decimal_longitude_public
description Short reads
dna_treatment n/a
download
experimental_design IlluminaSR 250bpPE 500bp insert
facility UNSW
facility_project_code Q0006549
facility_sample_id HAM9610A1
family Chelidae
fast5_compression
file_count
file_type fastq
flowcell_id HF2MCDRXY
flowcell_type NovaSeq SP
folder_name 20210824_AusARG_UNSW_HF2MCDRXY
genotypic_sex
genus Emydura
habitat
identified_by
insert_size_range 250bp PE
institution_name
latitude
library_comments n/a
library_construction_protocol Illumina DNA PCR-free
library_id 102.100.100/353857
library_index_id UDP0161
library_index_id_dual UDP0161B
library_index_seq AATTCCATCT
library_index_seq_dual CTTCAGTTAC
library_layout paired end
library_location UNSW
library_ng_ul 3.22
library_oligo_sequence
library_oligo_sequence_dual
library_pcr_cycles 0.0
library_pcr_reps 1.0
library_prep_date 2021-08-18
library_prepared_by Ramaciotti Centre
library_selection RANDOM
library_source GENOMIC
library_status
library_strategy WGA
library_type Illumina-shortread
lifestage
location_text
longitude
material_conc_ng_ul
material_extracted_by
material_extraction_date
material_extraction_method
material_extraction_type
method_of_determination
model_base_caller n/a
movie_length n/a
n_libraries_pooled 3
order Testudines
phenotypic_sex
phylum Chordata
prior_genetics
project_aim Reference genome
sample_custodian
sample_id 102.100.100/349826
sample_quality
scientific_name Emydura macquarii
sequencing_facility Ramaciotti
sequencing_kit_chemistry_version NovaSeq v1.5
sequencing_model Illumina NovaSeq 6000
sequencing_platform ILLUMINA
source_population
species macquarii
specimen_id AA062704
specimen_id_description
state_or_region
subspecies NA
taxon_id 90392.0
taxonomic_group
ticket BPAOPS-1130
tissue_collection
tissue_number AA018928
tissue_preservation
tissue_type blood
type_status
voucher_or_tissue_number AA018928
wild_captive
work_order 13030.0