bpa-ausarg-illumina-fastq-350848-hf7cfdrxy

Ranoidea (Litoria) serrata, Illumina NovaSeq 6000 WGA, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
access_rights No restrictions
ala_specimen_url
analysis_software Bcl2fastq2
analysis_software_version v2.20
ancillary_notes in amplexus with 349771 when collected, 50 tadpoles from this mating are sampled in ethanol
associated_media
ausarg_project
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1097/20210621_AusARG_UNSW_HF7CFDRXY/
bioplatforms_dataset_id 102.100.100/351750
bioplatforms_library_id 102.100.100/350848
bioplatforms_sample_id 102.100.100/349770
birth_date
ccg_jira_ticket BPAOPS-1097
cell_postion
certainty high
class Amphibia
collection_date 2021-02-26
collection_method spotlighting
collector Conrad Hoskin | Lorenzo Bertola | James Cook University
collector_sample_id CONX5982
common_name Green-eyed tree frog
coord_uncertainty_metres unknown
country Australia
data_context Reference genome
data_custodian Megan Higgie
data_generated True
data_type Illumina-shortread
dataset_id 102.100.100/351750
date_of_transfer 24/06/2021
date_of_transfer_to_archive 24/6/21
death_date 2021-02-28
decimal_latitude_public -17.53946
decimal_longitude_public 145.68899
description Short reads
dna_treatment
download
experimental_design IlluminaSR 250bpPE 500bp insert
facility UNSW
facility_project_code Q0005371
facility_sample_id HIG9100A1
family Hylidae
fast5_compression
file_count
file_type
flowcell_id HF7CFDRXY
flowcell_type NovaSeq SP
folder_name 20210621_AusARG_UNSW_HF7CFDRXY
genotypic_sex not determined
genus Ranoidea (Litoria)
habitat tropical mixed forest biome
identified_by Conrad Hoskin
insert_size_range 550.0
institution_name James Cook University
latitude -17.53946
library_comments 60x (heterogametic animal)
library_construction_protocol Illumina DNA PCR-Free
library_id 102.100.100/350848
library_index_id UDP0170-UDP0170B_B10
library_index_id_dual
library_index_seq GCACCACCAA-ATCAGTACCA
library_index_seq_dual
library_layout
library_location UNSW
library_ng_ul 4.53
library_oligo_sequence
library_oligo_sequence_dual
library_pcr_cycles
library_pcr_reps
library_prep_date 2021-06-08
library_prepared_by Ramaciotti Centre
library_selection
library_source
library_status Library sequenced
library_strategy
library_type WGA
lifestage prime adult stage
location_text Tributary of North Johnstone River, 200 m north-east from Mungalli Creek Dairy Café, Brooks Rd, Mungalli,
longitude 145.68899
material_conc_ng_ul
material_extracted_by Lorenzo Bertola
material_extraction_date 2021-03-05
material_extraction_method chloroform (CTAB)
material_extraction_type DNA
method_of_determination presence of nuptial pads
model_base_caller
movie_length
n_libraries_pooled 1
order Anura
phenotypic_sex male
phylum Chordata
prior_genetics
project_aim Reference genome
sample_custodian Megan Higgie | Conrad Hoskin
sample_id 102.100.100/349770
sample_quality freshly sampled
scientific_name Litoria serrata
sequencing_facility UNSW
sequencing_kit_chemistry_version
sequencing_model
sequencing_platform Illumina NovaSeq 6000
source_population Australia, Queensland, Wet Tropics, Atherton tablelands
species serrata
specimen_id TBC
specimen_id_description Queensland Museum
state_or_region Queensland
subspecies southern lineage
taxon_id 143878.0
taxonomic_group frog
ticket BPAOPS-1097
tissue_collection Adaptation Lab (Higgie & Hoskin)
tissue_number CONX5982
tissue_preservation ethanol | -20C | frozen
tissue_type toe disc
type_status unknown
voucher_or_tissue_number CONX5982
wild_captive wild
work_order 13016.0