JSON

bpa-ausarg-illumina-fastq-350747-htyh7drxx

Bassiana duperreyi, Reference Genome, NovaSeq 6000 DNA Prep,

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights
ala_specimen_url
analysis_software Bcl2fastq2 v2.20
analysis_software_version v2.20
ancillary_notes
associated_media
ausarg_project Reference Genome
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1019/20201215_AusARG_UNSW_HTYH7DRXX/
bioplatforms_dataset_id 102.100.100/351735
bioplatforms_library_id 102.100.100/350747
bioplatforms_sample_id 102.100.100/349747
birth_date
ccg_jira_ticket BPAOPS-1019
cell_postion
certainty
class Reptilia
collection_date
collection_method
collector
collector_sample_id
common_name Eastern Three-lined Skink
coord_uncertainty_metres
country
data_custodian Arthur Georges
data_generated True
data_type Illumina-fastq
dataset_id 102.100.100/351735
date_of_transfer 16/12/20
date_of_transfer_to_archive 18/12/2020
death_date
description Short reads
dna_treatment
download
experimental_design IlluminaSR 250bpPE 500bp insert
facility UNSW
facility_sample_id GEO8864A1
family Scincidae
file_count
flowcell_id HTYH7DRXX
flowcell_type NovaSeq SP (lane)
folder_name 20201215_AusARG_UNSW_HTYH7DRXX
genotypic_sex
genus Bassiana
habitat
identified_by
insert_size_range 550.0
institution_name
latitude
library_comments
library_construction_protocol Illumina DNA PCR-Free Prep
library_id 102.100.100/350747
library_index_id UDP0095
library_index_seq GTATTCCACC-TTGTCTACAT
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 0.78
library_oligo_sequence
library_pcr_cycles
library_pcr_reps
library_prep_date 2020-12-07
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_status Data available
library_type DNA Prep
lifestage
location_text
longitude
material_conc_ng_ul
material_extracted_by
material_extraction_date
material_extraction_method
material_extraction_type
method_of_determination
movie_length
n_libraries_pooled 5.0
order Squamata
phenotypic_sex
phylum Chordata
prior_genetics
project_aim Reference genome
sample_custodian
sample_id 102.100.100/349747
sample_quality
scientific_name Bassiana duperreyi
sequencing_facility Ramaciotti_UNSW
sequencing_platform NovaSeq 6000
source_population
species duperreyi
specimen_id
specimen_id_description
state_or_region
subspecies
taxon_id
taxonomic_group
ticket BPAOPS-1019
tissue_collection
tissue_number
tissue_preservation
tissue_type
type_status
voucher_or_tissue_number
wild_captive
work_order 13009.0