bpa-ausarg-illumina-fastq-350747-htyh7drxx

Bassiana duperreyi, Reference Genome, NovaSeq 6000 DNA Prep, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
access_rights No restrictions
ala_specimen_url NA
analysis_software Bcl2fastq2 v2.20
analysis_software_version v2.20
ancillary_notes NA
associated_media NA
ausarg_project Reference Genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1019/20201215_AusARG_UNSW_HTYH7DRXX/
bioplatforms_dataset_id 102.100.100/351735
bioplatforms_library_id 102.100.100/350747
bioplatforms_sample_id 102.100.100/349747
birth_date
ccg_jira_ticket BPAOPS-1019
cell_postion
certainty High
class Reptilia
collection_date 2018-12-12
collection_method Field work
collector Duminda Dissanayake
collector_sample_id DDBD_364
common_name Eastern three-lined skink
coord_uncertainty_metres 5.0
country Australia
data_context
data_custodian Arthur Georges
data_generated True
data_type Illumina-fastq
dataset_id 102.100.100/351735
date_of_transfer 16/12/20
date_of_transfer_to_archive 18/12/2020
death_date
decimal_latitude_public -35.52487778
decimal_longitude_public 148.7829583
description Short reads
dna_treatment
download
experimental_design IlluminaSR 250bpPE 500bp insert
facility UNSW
facility_project_code
facility_sample_id GEO8864A1
family Scincidae
fast5_compression
file_count
file_type
flowcell_id HTYH7DRXX
flowcell_type NovaSeq SP (lane)
folder_name 20201215_AusARG_UNSW_HTYH7DRXX
genotypic_sex XY
genus Bassiana
habitat Alpine
identified_by Duminda Dissanayake
insert_size_range 550.0
institution_name University of Canberra
latitude -35.52487778
library_comments
library_construction_protocol Illumina DNA PCR-Free Prep
library_id 102.100.100/350747
library_index_id UDP0095
library_index_id_dual
library_index_seq GTATTCCACC-TTGTCTACAT
library_index_seq_dual
library_layout
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 0.78
library_oligo_sequence
library_oligo_sequence_dual
library_pcr_cycles
library_pcr_reps
library_prep_date 2020-12-07
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_selection
library_source
library_status Data available
library_strategy
library_type DNA Prep
lifestage adult
location_text Mt Ginini
longitude 148.7829583
material_conc_ng_ul 217.0
material_extracted_by Duminda Dissanayake
material_extraction_date 2020-11-23
material_extraction_method DNA - Spooling technique
material_extraction_type DNA
method_of_determination PCR sex test
model_base_caller
movie_length
n_libraries_pooled 5
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics 10x genomics
project_aim Reference genome
sample_custodian Arthur Georges
sample_id 102.100.100/349747
sample_quality high
scientific_name Bassiana duperreyi
sequencing_facility Ramaciotti_UNSW
sequencing_kit_chemistry_version
sequencing_model
sequencing_platform NovaSeq 6000
source_population Mt Ginini
species duperreyi
specimen_id DDBD_364
specimen_id_description University of Canberra
state_or_region ACT
subspecies NA
taxon_id 316450.0
taxonomic_group skink
ticket BPAOPS-1019
tissue_collection University of Canberra
tissue_number DDBD_364_A
tissue_preservation ethanol
tissue_type muscle - body
type_status NA
voucher_or_tissue_number AA094425
wild_captive wild-caught
work_order 13009.0