bpa-ausarg-illumina-fastq-350744-htyh7drxx

Tiliqua rugosa, Reference Genome, NovaSeq 6000 DNA Prep, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
access_rights No restrictions
ala_specimen_url NA
analysis_software Bcl2fastq2 v2.20
analysis_software_version v2.20
ancillary_notes NA
associated_media NA
ausarg_project Reference Genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1019/20201215_AusARG_UNSW_HTYH7DRXX/
bioplatforms_dataset_id 102.100.100/351735
bioplatforms_library_id 102.100.100/350744
bioplatforms_sample_id 102.100.100/349744
birth_date
ccg_jira_ticket BPAOPS-1019
cell_postion
certainty uncertain - sex genotyped with a null band
class Reptilia
collection_date 1991-11-11
collection_method unknown
collector A Robinson
collector_sample_id NA
common_name shingleback/sleepy lizard/bobtail
coord_uncertainty_metres unknown
country Australia
data_context
data_custodian Terry Bertozzi
data_generated True
data_type Illumina-fastq
dataset_id 102.100.100/351735
date_of_transfer 16/12/20
date_of_transfer_to_archive 18/12/2020
death_date 1991-11-11
decimal_latitude_public -35.4975
decimal_longitude_public 140.7391667
description Short reads
dna_treatment
download
experimental_design IlluminaSR 250bpPE 500bp insert
facility UNSW
facility_project_code
facility_sample_id BER8825A2
family Scincidae
fast5_compression
file_count
file_type
flowcell_id HTYH7DRXX
flowcell_type NovaSeq SP (lane)
folder_name 20201215_AusARG_UNSW_HTYH7DRXX
genotypic_sex female
genus Tiliqua
habitat unknown
identified_by A Robinson
insert_size_range 550.0
institution_name South Australian Museum
latitude -35.4975
library_comments
library_construction_protocol Illumina DNA PCR-Free Prep
library_id 102.100.100/350744
library_index_id UDP0092
library_index_id_dual
library_index_seq GCGTTGGTAT-GGAAGTATGT
library_index_seq_dual
library_layout
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 1.01
library_oligo_sequence
library_oligo_sequence_dual
library_pcr_cycles
library_pcr_reps
library_prep_date 2020-12-07
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_selection
library_source
library_status Data available
library_strategy
library_type DNA Prep
lifestage Adult organism
location_text 5.5 KM E OF DUCK HOLE
longitude 140.7391667
material_conc_ng_ul 160.0
material_extracted_by Amy Slender
material_extraction_date 2020-09-07
material_extraction_method Puregen Genomic DNA purification kit
material_extraction_type DNA
method_of_determination sexing marker
model_base_caller
movie_length
n_libraries_pooled 5
order Squamata
phenotypic_sex not determined
phylum Chordata
prior_genetics unknown
project_aim Reference genome
sample_custodian Terry Bertozzi
sample_id 102.100.100/349744
sample_quality excellent
scientific_name Tiliqua rugosa
sequencing_facility Ramaciotti_UNSW
sequencing_kit_chemistry_version
sequencing_model
sequencing_platform NovaSeq 6000
source_population NA
species rugosa
specimen_id SAMAR39302
specimen_id_description South Australian Museum
state_or_region South Australia
subspecies asper
taxon_id 8527.0
taxonomic_group lizard
ticket BPAOPS-1019
tissue_collection Australian Biological Tissue Collection
tissue_number ABTC34514
tissue_preservation liquid nitrogen | -80C
tissue_type liver
type_status no
voucher_or_tissue_number SAMAR39302
wild_captive wild
work_order 13009.0