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bpa-ausarg-illumina-fastq-350743-htyh7drxx

Tiliqua rugosa, Reference Genome, NovaSeq 6000 DNA Prep, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights No restrictions
ala_specimen_url NA
analysis_software Bcl2fastq2 v2.20
analysis_software_version v2.20
ancillary_notes Animal was taken from bundey Bore Station homestead area and was put into captivity after the life in cold blood series in 2008. In regards to the common name - given this is a South Australian animal is common name is the sleepy lizard rather than shingleback or bobtail.
associated_media TrG_genomeLizard1_ventral.jpg; TrG_genomeLizard1_WholeDorsal.jpg; TrG_genomeLizard2_ventral.jpg; TrG_genomeLizard1_Head.jpg; TrG_GenomeLizard_4March2020_Face.jpg
ausarg_project Reference Genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1019/20201215_AusARG_UNSW_HTYH7DRXX/
bioplatforms_dataset_id 102.100.100/351735
bioplatforms_library_id 102.100.100/350743
bioplatforms_sample_id 102.100.100/349743
birth_date
ccg_jira_ticket BPAOPS-1019
cell_postion
certainty certain
class Reptilia
collection_date
collection_method hand capture
collector Dale Burzacott
collector_sample_id NA
common_name shingleback/sleepy lizard/bobtail
coord_uncertainty_metres unknown
country Australia
data_custodian Terry Bertozzi
data_generated True
data_type Illumina-fastq
dataset_id 102.100.100/351735
date_of_transfer 16/12/20
date_of_transfer_to_archive 18/12/2020
death_date 2020-03-04
description Short reads
dna_treatment
download
experimental_design IlluminaSR 250bpPE 500bp insert
facility UNSW
facility_sample_id BER8825A1
family Scincidae
file_count
flowcell_id HTYH7DRXX
flowcell_type NovaSeq SP (lane)
folder_name 20201215_AusARG_UNSW_HTYH7DRXX
genotypic_sex male
genus Tiliqua
habitat xeric shrubland biome
identified_by Mike Gardner
insert_size_range 550.0
institution_name South Australian Museum
latitude -33.886547
library_comments
library_construction_protocol Illumina DNA PCR-Free Prep
library_id 102.100.100/350743
library_index_id UDP0091
library_index_seq TCAGAAGGCG-TATGATGGCC
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 0.77
library_oligo_sequence
library_pcr_cycles
library_pcr_reps
library_prep_date 2020-12-07
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_status Data available
library_type DNA Prep
lifestage Adult organism
location_text Bundey Bore Station homestead
longitude 139.355269
material_conc_ng_ul 15.6 -114
material_extracted_by Terry Bertozzi
material_extraction_date 2020-08-13
material_extraction_method Circulomics Nanobind Tissue big DNA kit
material_extraction_type DNA
method_of_determination dissection and sexing marker
movie_length
n_libraries_pooled 5.0
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics spleen transcriptome
project_aim Reference genome
sample_custodian Terry Bertozzi | Michael Gardner
sample_id 102.100.100/349743
sample_quality excellent
scientific_name Tiliqua rugosa
sequencing_facility Ramaciotti_UNSW
sequencing_platform NovaSeq 6000
source_population NA
species rugosa
specimen_id SAMAR71619
specimen_id_description South Australian Museum
state_or_region South Australia
subspecies asper
taxon_id 8527.0
taxonomic_group lizard
ticket BPAOPS-1019
tissue_collection Australian Biological Tissue Collection
tissue_number ABTC151652
tissue_preservation liquid nitrogen | -80C
tissue_type muscle structure
type_status no
voucher_or_tissue_number SAMAR71619
wild_captive wild (captive since 2008)
work_order 13009.0