bpa-ausarg-illumina-fastq-350739-hggkcbgxh
Data and Resources
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| access_rights | Location information restricted |
| ala_specimen_url | |
| analysis_software | Illumina_basespace |
| analysis_software_version | GenerateFASTQ v1.1.0.66 |
| ancillary_notes | Eaten by Traditional Owners |
| associated_media | photo P8090071.jpg |
| ausarg_project | Reference Genome |
| barcode_id | |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1000/20201202_AusARG_UNSW_HGGKCBGXH/ |
| bioplatforms_dataset_id | 102.100.100/351730 |
| bioplatforms_library_id | 102.100.100/350739 |
| bioplatforms_sample_id | 102.100.100/349739 |
| birth_date | |
| ccg_jira_ticket | BPAOPS-1000 |
| cell_postion | |
| certainty | Highly likely |
| class | Reptilia |
| collection_date | 2018-08-03 |
| collection_method | |
| collector | Institute for Applied Ecology | Matthew Young | University of Canberra |
| collector_sample_id | AA072012 |
| common_name | Pig-nosed turtle |
| coord_uncertainty_metres | 10.0 |
| country | Australia |
| data_context | |
| data_custodian | University of Canberra | Arthur Georges |
| data_generated | True |
| data_type | Illumina-fastq |
| dataset_id | 102.100.100/351730 |
| date_of_transfer | 3/12/20 |
| date_of_transfer_to_archive | 3/12/2020 |
| death_date | 2018-08-03 |
| decimal_latitude_public | |
| decimal_longitude_public | |
| description | RNA-seq |
| dna_treatment | |
| download | |
| experimental_design | Transcriptome in support of annotation |
| facility | UNSW |
| facility_project_code | |
| facility_sample_id | GEO8830A3 |
| family | Carettochelyidae |
| fast5_compression | |
| file_count | |
| file_type | |
| flowcell_id | HGGKCBGXH |
| flowcell_type | NextSeq v2.5 Highoutput |
| folder_name | 20201202_AusARG_UNSW_AHGGKCBGXH |
| genotypic_sex | |
| genus | Carettochelys |
| habitat | River |
| identified_by | Institute for Applied Ecology | Matthew Young | University of Canberra |
| insert_size_range | 200_1000bp |
| institution_name | University of Canberra | Institute for Applied Ecology |
| latitude | |
| library_comments | input amount 0.5ug |
| library_construction_protocol | Illumina Stranded mRNA |
| library_id | 102.100.100/350739 |
| library_index_id | UDP0099 |
| library_index_id_dual | |
| library_index_seq | TCTCACAC-TCACTGTC |
| library_index_seq_dual | |
| library_layout | |
| library_location | Ramaciotti Centre for Genomics_UNSW |
| library_ng_ul | 11.5 |
| library_oligo_sequence | |
| library_oligo_sequence_dual | |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | |
| library_prep_date | |
| library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
| library_selection | |
| library_source | |
| library_status | Sequenced |
| library_strategy | |
| library_type | RNA Seq |
| lifestage | Adult organism |
| location_text | Medjing Valley | West Arnhem Land |
| longitude | |
| material_conc_ng_ul | |
| material_extracted_by | |
| material_extraction_date | |
| material_extraction_method | |
| material_extraction_type | |
| method_of_determination | External | Phallus present |
| model_base_caller | |
| movie_length | |
| n_libraries_pooled | 8 |
| order | Testudines |
| phenotypic_sex | Male |
| phylum | Chordata |
| prior_genetics | DArTseq (ddRADseq) | ND4 GenBank accession TBA | D-loop GenBank accession TBA |
| project_aim | Reference genome |
| sample_custodian | University of Canberra | Arthur Georges |
| sample_id | 102.100.100/349739 |
| sample_quality | |
| scientific_name | Carettochelys insculpta |
| sequencing_facility | Ramaciotti_UNSW |
| sequencing_kit_chemistry_version | |
| sequencing_model | |
| sequencing_platform | NextSeq500 |
| source_population | East Alligator |
| species | insculpta |
| specimen_id | AA072680 |
| specimen_id_description | Unique identifier for the specimen/animal from the UC Wildlife Tissue Collection |
| state_or_region | Northern Territory |
| subspecies | NA |
| taxon_id | 44489.0 |
| taxonomic_group | turtle |
| ticket | BPAOPS-1000 |
| tissue_collection | University of Canberra | Wildlife Tissue Collection |
| tissue_number | AA072012 |
| tissue_preservation | RNAlater | Frozen -80°C |
| tissue_type | Pancreas |
| type_status | No |
| voucher_or_tissue_number | AA072012 |
| wild_captive | Wild |
| work_order | 13006.0 |