JSON
bpa-ausarg-illumina-fastq-350739-hggkcbgxh
Data and Resources
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| access_rights | |
| ala_specimen_url | |
| analysis_software | Illumina_basespace |
| analysis_software_version | GenerateFASTQ v1.1.0.66 |
| ancillary_notes | |
| associated_media | |
| ausarg_project | Reference Genome |
| barcode_id | |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1000/20201202_AusARG_UNSW_HGGKCBGXH/ |
| bioplatforms_dataset_id | 102.100.100/351730 |
| bioplatforms_library_id | 102.100.100/350739 |
| bioplatforms_sample_id | 102.100.100/349739 |
| birth_date | |
| ccg_jira_ticket | BPAOPS-1000 |
| cell_postion | |
| certainty | |
| class | Reptilia |
| collection_date | |
| collection_method | |
| collector | |
| collector_sample_id | |
| common_name | Pig-nosed turtle |
| coord_uncertainty_metres | |
| country | |
| data_custodian | University of Canberra | Arthur Georges |
| data_generated | True |
| data_type | Illumina-fastq |
| dataset_id | 102.100.100/351730 |
| date_of_transfer | 3/12/20 |
| date_of_transfer_to_archive | 3/12/2020 |
| death_date | |
| description | RNA-seq |
| dna_treatment | |
| download | |
| experimental_design | Transcriptome in support of annotation |
| facility | UNSW |
| facility_sample_id | GEO8830A3 |
| family | Carettochelyidae |
| file_count | |
| flowcell_id | HGGKCBGXH |
| flowcell_type | NextSeq v2.5 Highoutput |
| folder_name | 20201202_AusARG_UNSW_AHGGKCBGXH |
| genotypic_sex | |
| genus | Carettochelys |
| habitat | |
| identified_by | |
| insert_size_range | 200_1000bp |
| institution_name | |
| latitude | |
| library_comments | input amount 0.5ug |
| library_construction_protocol | Illumina Stranded mRNA |
| library_id | 102.100.100/350739 |
| library_index_id | UDP0099 |
| library_index_seq | TCTCACAC-TCACTGTC |
| library_location | Ramaciotti Centre for Genomics_UNSW |
| library_ng_ul | 11.5 |
| library_oligo_sequence | |
| library_pcr_cycles | 9.0 |
| library_pcr_reps | |
| library_prep_date | |
| library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
| library_status | Sequenced |
| library_type | RNA Seq |
| lifestage | |
| location_text | |
| longitude | |
| material_conc_ng_ul | |
| material_extracted_by | |
| material_extraction_date | |
| material_extraction_method | |
| material_extraction_type | |
| method_of_determination | |
| movie_length | |
| n_libraries_pooled | 8.0 |
| order | Testudines |
| phenotypic_sex | |
| phylum | Chordata |
| prior_genetics | |
| project_aim | Reference genome |
| sample_custodian | |
| sample_id | 102.100.100/349739 |
| sample_quality | |
| scientific_name | Carettochelys insculpta |
| sequencing_facility | Ramaciotti_UNSW |
| sequencing_platform | NextSeq500 |
| source_population | |
| species | insculpta |
| specimen_id | |
| specimen_id_description | |
| state_or_region | |
| subspecies | |
| taxon_id | |
| taxonomic_group | |
| ticket | BPAOPS-1000 |
| tissue_collection | |
| tissue_number | |
| tissue_preservation | |
| tissue_type | |
| type_status | |
| voucher_or_tissue_number | |
| wild_captive | |
| work_order | 13006.0 |