
bpa-ausarg-illumina-fastq-350739-hggkcbgxh
Data and Resources
Additional Info
Field | Value |
---|---|
Geospatial Coverage | |
Resource Permissions | organization_member |
access_rights | |
ala_specimen_url | |
analysis_software | Illumina_basespace |
analysis_software_version | GenerateFASTQ v1.1.0.66 |
ancillary_notes | |
associated_media | |
ausarg_project | Reference Genome |
barcode_id | |
base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1000/20201202_AusARG_UNSW_HGGKCBGXH/ |
bioplatforms_dataset_id | 102.100.100/351730 |
bioplatforms_library_id | 102.100.100/350739 |
bioplatforms_sample_id | 102.100.100/349739 |
birth_date | |
ccg_jira_ticket | BPAOPS-1000 |
cell_postion | |
certainty | |
class | Reptilia |
collection_date | |
collection_method | |
collector | |
collector_sample_id | |
common_name | Pig-nosed turtle |
coord_uncertainty_metres | |
country | |
data_custodian | University of Canberra | Arthur Georges |
data_generated | True |
data_type | Illumina-fastq |
dataset_id | 102.100.100/351730 |
date_of_transfer | 3/12/20 |
date_of_transfer_to_archive | 3/12/2020 |
death_date | |
description | RNA-seq |
dna_treatment | |
download | |
experimental_design | Transcriptome in support of annotation |
facility | UNSW |
facility_sample_id | GEO8830A3 |
family | Carettochelyidae |
file_count | |
flowcell_id | HGGKCBGXH |
flowcell_type | NextSeq v2.5 Highoutput |
folder_name | 20201202_AusARG_UNSW_AHGGKCBGXH |
genotypic_sex | |
genus | Carettochelys |
habitat | |
identified_by | |
insert_size_range | 200_1000bp |
institution_name | |
latitude | |
library_comments | input amount 0.5ug |
library_construction_protocol | Illumina Stranded mRNA |
library_id | 102.100.100/350739 |
library_index_id | UDP0099 |
library_index_seq | TCTCACAC-TCACTGTC |
library_location | Ramaciotti Centre for Genomics_UNSW |
library_ng_ul | 11.5 |
library_oligo_sequence | |
library_pcr_cycles | 9.0 |
library_pcr_reps | |
library_prep_date | |
library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
library_status | Sequenced |
library_type | RNA Seq |
lifestage | |
location_text | |
longitude | |
material_conc_ng_ul | |
material_extracted_by | |
material_extraction_date | |
material_extraction_method | |
material_extraction_type | |
method_of_determination | |
movie_length | |
n_libraries_pooled | 8.0 |
order | Testudines |
phenotypic_sex | |
phylum | Chordata |
prior_genetics | |
project_aim | Reference genome |
sample_custodian | |
sample_id | 102.100.100/349739 |
sample_quality | |
scientific_name | Carettochelys insculpta |
sequencing_facility | Ramaciotti_UNSW |
sequencing_platform | NextSeq500 |
source_population | |
species | insculpta |
specimen_id | |
specimen_id_description | |
state_or_region | |
subspecies | |
taxon_id | |
taxonomic_group | |
ticket | BPAOPS-1000 |
tissue_collection | |
tissue_number | |
tissue_preservation | |
tissue_type | |
type_status | |
voucher_or_tissue_number | |
wild_captive | |
work_order | 13006.0 |