bpa-ausarg-illumina-fastq-350738-hggkcbgxh

Carettochelys insculpta, Reference Genome, NextSeq500 RNA Seq, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
access_rights Location information restricted
ala_specimen_url
analysis_software Illumina_basespace
analysis_software_version GenerateFASTQ v1.1.0.65
ancillary_notes Eaten by Traditional Owners
associated_media photo P8090071.jpg
ausarg_project Reference Genome
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1000/20201202_AusARG_UNSW_HGGKCBGXH/
bioplatforms_dataset_id 102.100.100/351730
bioplatforms_library_id 102.100.100/350738
bioplatforms_sample_id 102.100.100/349738
birth_date
ccg_jira_ticket BPAOPS-1000
cell_postion
certainty Highly likely
class Reptilia
collection_date 2018-08-03
collection_method
collector Institute for Applied Ecology | Matthew Young | University of Canberra
collector_sample_id AA072011
common_name Pig-nosed turtle
coord_uncertainty_metres 10.0
country Australia
data_context
data_custodian University of Canberra | Arthur Georges
data_generated True
data_type Illumina-fastq
dataset_id 102.100.100/351730
date_of_transfer 3/12/20
date_of_transfer_to_archive 3/12/2020
death_date 2018-08-03
decimal_latitude_public
decimal_longitude_public
description RNA-seq
dna_treatment
download
experimental_design Transcriptome in support of annotation
facility UNSW
facility_project_code
facility_sample_id GEO8830A2
family Carettochelyidae
fast5_compression
file_count
file_type
flowcell_id HGGKCBGXH
flowcell_type NextSeq v2.5 Highoutput
folder_name 20201202_AusARG_UNSW_AHGGKCBGXH
genotypic_sex
genus Carettochelys
habitat River
identified_by Institute for Applied Ecology | Matthew Young | University of Canberra
insert_size_range 200_1000bp
institution_name University of Canberra | Institute for Applied Ecology
latitude
library_comments input amount 0.5ug
library_construction_protocol Illumina Stranded mRNA
library_id 102.100.100/350738
library_index_id UDP0098
library_index_id_dual
library_index_seq CACTCAAT-CACAACTT
library_index_seq_dual
library_layout
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 8.26
library_oligo_sequence
library_oligo_sequence_dual
library_pcr_cycles 9.0
library_pcr_reps
library_prep_date
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_selection
library_source
library_status Sequenced
library_strategy
library_type RNA Seq
lifestage Adult organism
location_text Medjing Valley | West Arnhem Land
longitude
material_conc_ng_ul
material_extracted_by
material_extraction_date
material_extraction_method
material_extraction_type
method_of_determination External | Phallus present
model_base_caller
movie_length
n_libraries_pooled 8
order Testudines
phenotypic_sex Male
phylum Chordata
prior_genetics DArTseq (ddRADseq) | ND4 GenBank accession TBA | D-loop GenBank accession TBA
project_aim Reference genome
sample_custodian University of Canberra | Arthur Georges
sample_id 102.100.100/349738
sample_quality
scientific_name Carettochelys insculpta
sequencing_facility Ramaciotti_UNSW
sequencing_kit_chemistry_version
sequencing_model
sequencing_platform NextSeq500
source_population East Alligator
species insculpta
specimen_id AA072680
specimen_id_description Unique identifier for the specimen/animal from the UC Wildlife Tissue Collection
state_or_region Northern Territory
subspecies NA
taxon_id 44489.0
taxonomic_group turtle
ticket BPAOPS-1000
tissue_collection University of Canberra | Wildlife Tissue Collection
tissue_number AA072011
tissue_preservation RNAlater | Frozen -80°C
tissue_type Testes
type_status No
voucher_or_tissue_number AA072011
wild_captive Wild
work_order 13006.0