JSON

bpa-ausarg-illumina-fastq-350738-hggkcbgxh

Carettochelys insculpta, Reference Genome, NextSeq500 RNA Seq,

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights
ala_specimen_url
analysis_software Illumina_basespace
analysis_software_version GenerateFASTQ v1.1.0.65
ancillary_notes
associated_media
ausarg_project Reference Genome
barcode_id
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1000/20201202_AusARG_UNSW_HGGKCBGXH/
bioplatforms_dataset_id 102.100.100/351730
bioplatforms_library_id 102.100.100/350738
bioplatforms_sample_id 102.100.100/349738
birth_date
ccg_jira_ticket BPAOPS-1000
cell_postion
certainty
class Reptilia
collection_date
collection_method
collector
collector_sample_id
common_name Pig-nosed turtle
coord_uncertainty_metres
country
data_custodian University of Canberra | Arthur Georges
data_generated True
data_type Illumina-fastq
dataset_id 102.100.100/351730
date_of_transfer 3/12/20
date_of_transfer_to_archive 3/12/2020
death_date
description RNA-seq
dna_treatment
download
experimental_design Transcriptome in support of annotation
facility UNSW
facility_sample_id GEO8830A2
family Carettochelyidae
file_count
flowcell_id HGGKCBGXH
flowcell_type NextSeq v2.5 Highoutput
folder_name 20201202_AusARG_UNSW_AHGGKCBGXH
genotypic_sex
genus Carettochelys
habitat
identified_by
insert_size_range 200_1000bp
institution_name
latitude
library_comments input amount 0.5ug
library_construction_protocol Illumina Stranded mRNA
library_id 102.100.100/350738
library_index_id UDP0098
library_index_seq CACTCAAT-CACAACTT
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 8.26
library_oligo_sequence
library_pcr_cycles 9.0
library_pcr_reps
library_prep_date
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_status Sequenced
library_type RNA Seq
lifestage
location_text
longitude
material_conc_ng_ul
material_extracted_by
material_extraction_date
material_extraction_method
material_extraction_type
method_of_determination
movie_length
n_libraries_pooled 8.0
order Testudines
phenotypic_sex
phylum Chordata
prior_genetics
project_aim Reference genome
sample_custodian
sample_id 102.100.100/349738
sample_quality
scientific_name Carettochelys insculpta
sequencing_facility Ramaciotti_UNSW
sequencing_platform NextSeq500
source_population
species insculpta
specimen_id
specimen_id_description
state_or_region
subspecies
taxon_id
taxonomic_group
ticket BPAOPS-1000
tissue_collection
tissue_number
tissue_preservation
tissue_type
type_status
voucher_or_tissue_number
wild_captive
work_order 13006.0