bpa-ausarg-illumina-fastq-350733-hggkcbgxh

Tiliqua rugosa, Reference Genome, NextSeq500 RNA Seq, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
access_rights No restrictions
ala_specimen_url NA
analysis_software Illumina_basespace
analysis_software_version GenerateFASTQ v1.1.0.64
ancillary_notes Animal was taken from bundey Bore Station homestead area and was put into captivity after the life in cold blood series in 2008. In regards to the common name - given this is a South Australian animal is common name is the sleepy lizard rather than shingleback or bobtail.
associated_media TrG_genomeLizard1_ventral.jpg; TrG_genomeLizard1_WholeDorsal.jpg; TrG_genomeLizard2_ventral.jpg; TrG_genomeLizard1_Head.jpg; TrG_GenomeLizard_4March2020_Face.jpg
ausarg_project Reference Genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1000/20201202_AusARG_UNSW_HGGKCBGXH/
bioplatforms_dataset_id 102.100.100/351730
bioplatforms_library_id 102.100.100/350733
bioplatforms_sample_id 102.100.100/349733
birth_date
ccg_jira_ticket BPAOPS-1000
cell_postion
certainty certain
class Reptilia
collection_date 1905-06-30
collection_method hand capture
collector Dale Burzacott
collector_sample_id NA
common_name shingleback/sleepy lizard/bobtail
coord_uncertainty_metres unknown
country Australia
data_context
data_custodian Terry Bertozzi
data_generated True
data_type Illumina-fastq
dataset_id 102.100.100/351730
date_of_transfer 3/12/20
date_of_transfer_to_archive 3/12/2020
death_date 2020-03-04
decimal_latitude_public -33.886547
decimal_longitude_public 139.355269
description RNA-seq
dna_treatment
download
experimental_design Transcriptome in support of annotation
facility UNSW
facility_project_code
facility_sample_id BER8825A5
family Scincidae
fast5_compression
file_count
file_type
flowcell_id HGGKCBGXH
flowcell_type NextSeq v2.5 Highoutput
folder_name 20201202_AusARG_UNSW_AHGGKCBGXH
genotypic_sex male
genus Tiliqua
habitat xeric shrubland biome
identified_by Mike Gardner
insert_size_range 200_1000bp
institution_name South Australian Museum
latitude -33.886547
library_comments input amount 0.5ug
library_construction_protocol Illumina Stranded mRNA
library_id 102.100.100/350733
library_index_id UDP0101
library_index_id_dual
library_index_seq ATATGCAT-CCAGGCAC
library_index_seq_dual
library_layout
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 12.9
library_oligo_sequence
library_oligo_sequence_dual
library_pcr_cycles 9.0
library_pcr_reps
library_prep_date
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_selection
library_source
library_status Sequenced
library_strategy
library_type RNA Seq
lifestage Adult organism
location_text Bundey Bore Station homestead
longitude 139.355269
material_conc_ng_ul 26.0
material_extracted_by Tessa Bradford
material_extraction_date 2020-10-20
material_extraction_method Qiagen Rneasy Mini Kit
material_extraction_type RNA
method_of_determination dissection and sexing marker
model_base_caller
movie_length
n_libraries_pooled 8
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics spleen transcriptome
project_aim Reference genome
sample_custodian Terry Bertozzi | Michael Gardner
sample_id 102.100.100/349733
sample_quality excellent
scientific_name Tiliqua rugosa
sequencing_facility Ramaciotti_UNSW
sequencing_kit_chemistry_version
sequencing_model
sequencing_platform NextSeq500
source_population NA
species rugosa
specimen_id SAMAR71619
specimen_id_description South Australian Museum
state_or_region South Australia
subspecies asper
taxon_id 8527.0
taxonomic_group lizard
ticket BPAOPS-1000
tissue_collection Australian Biological Tissue Collection
tissue_number ABTC151652
tissue_preservation liquid nitrogen | -80C
tissue_type brain
type_status no
voucher_or_tissue_number SAMAR71619
wild_captive wild (captive since 2008)
work_order 13006.0