
bpa-ausarg-illumina-fastq-350728-hh2jjbgxg
Data and Resources
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
Additional Info
Field | Value |
---|---|
Geospatial Coverage | |
Resource Permissions | organization_member |
access_rights | Public |
ala_specimen_url | NA |
analysis_software | GenerateFASTQ |
analysis_software_version | GenerateFASTQ: 1.1.0.64 |
ancillary_notes | NA |
associated_media | NA |
ausarg_project | Reference genome |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-948/ |
bioplatforms_dataset_id | 102.100.100/351721 |
bioplatforms_library_id | 102.100.100/350728 |
bioplatforms_sample_id | 102.100.100/349726 |
birth_date | |
ccg_jira_ticket | BPAOPS-948 |
cell_postion | |
certainty | Certain |
class | Reptilia |
collection_date | 2019-12-18 |
collection_method | Hand |
collector | Duminda Dissanayake |
collector_sample_id | DDBD_533_Ovary |
common_name | Eastern Three-lined Skink |
coord_uncertainty_metres | Exact |
country | Australia |
data_custodian | Arthur Georges |
data_generated | True |
data_type | Illumina-fastq |
dataset_id | 102.100.100/351721 |
date_of_transfer | 4/8/20 |
date_of_transfer_to_archive | 25/08/2020 |
death_date | |
description | RNA-seq |
dna_treatment | |
download | |
experimental_design | Transcriptome in support of annotation |
facility | UNSW |
facility_sample_id | GEO8324A9 |
family | Scincidae |
file_count | |
flowcell_id | HH2JJBGXG |
flowcell_type | NextSeq v2 Highoutput |
folder_name | 20200803_UNSW_AusARG_UNSW_HH2JJBGXG |
genotypic_sex | XX |
genus | Bassiana |
habitat | Eucalypt forest |
identified_by | Duminda Dissanayake |
insert_size_range | 200_1000bp |
institution_name | University of Canberra |
latitude | -37.0627777 |
library_comments | input amount 1ug |
library_construction_protocol | TruSeq Stranded mRNA |
library_id | 102.100.100/350728 |
library_index_id | UDI0009 |
library_index_seq | CCTGAACT-CCAACAGA |
library_location | Ramaciotti Centre for Genomics_UNSW |
library_ng_ul | 14.0 |
library_oligo_sequence | |
library_pcr_cycles | 12.0 |
library_pcr_reps | |
library_prep_date | |
library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
library_status | Sequenced |
library_type | RNA Seq |
lifestage | Adult |
location_text | Mount Hotham Airport Rd |
longitude | 147.3352777 |
material_conc_ng_ul | NA |
material_extracted_by | Garvan |
material_extraction_date | |
material_extraction_method | NA |
material_extraction_type | RNA |
method_of_determination | Dissection |
movie_length | |
n_libraries_pooled | 9.0 |
order | Squamata |
phenotypic_sex | Female |
phylum | Chordata |
prior_genetics | NA |
project_aim | Reference genome |
sample_custodian | Arthur Georges |
sample_id | 102.100.100/349726 |
sample_quality | Good |
scientific_name | Bassiana duperreyi |
sequencing_facility | Ramaciotti |
sequencing_platform | NextSeq500 |
source_population | Mt Hotham |
species | duperreyi |
specimen_id | DDBD_533 |
specimen_id_description | UCanberra collection |
state_or_region | Victoria |
subspecies | NA |
taxon_id | NA |
taxonomic_group | Skink |
ticket | BPAOPS-948 |
tissue_collection | UC<Aus> |
tissue_number | DDBD_533_Ovary |
tissue_preservation | Frozen |
tissue_type | Ovary |
type_status | NA |
voucher_or_tissue_number | DDBD_533_Ovary |
wild_captive | Wild |
work_order | 13002.0 |