JSON
bpa-ausarg-illumina-fastq-350728-hh2jjbgxg
Data and Resources
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
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350728_AusARG_UNSW_HH2JJBGXG_CCT ... Access denied FASTQ
Additional Info
| Field | Value |
|---|---|
| Geospatial Coverage | |
| Resource Permissions | organization_member |
| access_rights | Public |
| ala_specimen_url | NA |
| analysis_software | GenerateFASTQ |
| analysis_software_version | GenerateFASTQ: 1.1.0.64 |
| ancillary_notes | NA |
| associated_media | NA |
| ausarg_project | Reference genome |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-948/ |
| bioplatforms_dataset_id | 102.100.100/351721 |
| bioplatforms_library_id | 102.100.100/350728 |
| bioplatforms_sample_id | 102.100.100/349726 |
| birth_date | |
| ccg_jira_ticket | BPAOPS-948 |
| cell_postion | |
| certainty | Certain |
| class | Reptilia |
| collection_date | 2019-12-18 |
| collection_method | Hand |
| collector | Duminda Dissanayake |
| collector_sample_id | DDBD_533_Ovary |
| common_name | Eastern Three-lined Skink |
| coord_uncertainty_metres | Exact |
| country | Australia |
| data_custodian | Arthur Georges |
| data_generated | True |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/351721 |
| date_of_transfer | 4/8/20 |
| date_of_transfer_to_archive | 25/08/2020 |
| death_date | |
| description | RNA-seq |
| dna_treatment | |
| download | |
| experimental_design | Transcriptome in support of annotation |
| facility | Ramaciotti Centre for Genomics- UNSW |
| facility_sample_id | GEO8324A9 |
| family | Scincidae |
| file_count | |
| flowcell_id | HH2JJBGXG |
| flowcell_type | NextSeq v2 Highoutput |
| folder_name | 20200803_UNSW_AusARG_UNSW_HH2JJBGXG |
| genotypic_sex | XX |
| genus | Bassiana |
| habitat | Eucalypt forest |
| identified_by | Duminda Dissanayake |
| insert_size_range | 200_1000bp |
| institution_name | University of Canberra |
| latitude | -37.0627777 |
| library_comments | input amount 1ug |
| library_construction_protocol | TruSeq Stranded mRNA |
| library_id | 102.100.100/350728 |
| library_index_id | UDI0009 |
| library_index_seq | CCTGAACT-CCAACAGA |
| library_location | Ramaciotti Centre for Genomics_UNSW |
| library_ng_ul | 14.0 |
| library_oligo_sequence | |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | |
| library_prep_date | |
| library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
| library_status | Sequenced |
| library_type | RNA Seq |
| lifestage | Adult |
| location_text | Mount Hotham Airport Rd |
| longitude | 147.3352777 |
| material_conc_ng_ul | NA |
| material_extracted_by | Garvan |
| material_extraction_date | |
| material_extraction_method | NA |
| material_extraction_type | RNA |
| method_of_determination | Dissection |
| movie_length | |
| n_libraries_pooled | 9.0 |
| order | Squamata |
| phenotypic_sex | Female |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| resource_permissions | organization_member |
| sample_custodian | Arthur Georges |
| sample_id | 102.100.100/349726 |
| sample_quality | Good |
| scientific_name | Bassiana duperreyi |
| sequencing_facility | Ramaciotti |
| sequencing_platform | NextSeq500 |
| source_population | Mt Hotham |
| species | duperreyi |
| specimen_id | DDBD_533 |
| specimen_id_description | UCanberra collection |
| state_or_region | Victoria |
| subspecies | NA |
| taxon_id | NA |
| taxonomic_group | Skink |
| ticket | BPAOPS-948 |
| tissue_collection | UC<Aus> |
| tissue_number | DDBD_533_Ovary |
| tissue_preservation | Frozen |
| tissue_type | Ovary |
| type_status | NA |
| voucher_or_tissue_number | DDBD_533_Ovary |
| wild_captive | Wild |
| work_order | 13002.0 |