JSON

bpa-ausarg-illumina-fastq-350727-hh2jjbgxg

Bassiana duperreyi, Reference genome, NextSeq500 RNA Seq, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions
access_rights Public
ala_specimen_url NA
analysis_software GenerateFASTQ
analysis_software_version GenerateFASTQ: 1.1.0.64
ancillary_notes NA
associated_media NA
ausarg_project Reference genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-948/
bioplatforms_dataset_id 102.100.100/351721
bioplatforms_library_id 102.100.100/350727
bioplatforms_sample_id 102.100.100/349725
birth_date
ccg_jira_ticket BPAOPS-948
cell_postion
certainty Certain
class Reptilia
collection_date 2019-12-18
collection_method Hand
collector Duminda Dissanayake
collector_sample_id DDBD_533_Heart
common_name Eastern Three-lined Skink
coord_uncertainty_metres Exact
country Australia
data_custodian Arthur Georges
data_generated True
data_type Illumina FASTQ
dataset_id 102.100.100/351721
date_of_transfer 4/8/20
date_of_transfer_to_archive 25/08/2020
death_date
description RNA-seq
dna_treatment
download
experimental_design Transcriptome in support of annotation
facility Ramaciotti Centre for Genomics- UNSW
facility_sample_id GEO8324A8
family Scincidae
file_count
flowcell_id HH2JJBGXG
flowcell_type NextSeq v2 Highoutput
folder_name 20200803_UNSW_AusARG_UNSW_HH2JJBGXG
genotypic_sex XX
genus Bassiana
habitat Eucalypt forest
identified_by Duminda Dissanayake
insert_size_range 200_1000bp
institution_name University of Canberra
latitude -37.0627777
library_comments input amount 1ug
library_construction_protocol TruSeq Stranded mRNA
library_id 102.100.100/350727
library_index_id UDI0008
library_index_seq TCGATCCA-GTGCGATA
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 4.56
library_oligo_sequence
library_pcr_cycles 12.0
library_pcr_reps
library_prep_date
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_status Sequenced
library_type RNA Seq
lifestage Adult
location_text Mount Hotham Airport Rd
longitude 147.3352777
material_conc_ng_ul
material_extracted_by Garvan
material_extraction_date
material_extraction_method
material_extraction_type RNA
method_of_determination Dissection
movie_length
n_libraries_pooled 9.0
order Squamata
phenotypic_sex Female
phylum Chordata
prior_genetics
project_aim Reference genome
resource_permissions
sample_custodian Arthur Georges
sample_id 102.100.100/349725
sample_quality Good
scientific_name Bassiana duperreyi
sequencing_facility Ramaciotti
sequencing_platform NextSeq500
source_population Mt Hotham
species duperreyi
specimen_id DDBD_533
specimen_id_description UCanberra collection
state_or_region Victoria
subspecies
taxon_id
taxonomic_group Skink
ticket BPAOPS-948
tissue_collection UC<Aus>
tissue_number DDBD_533_Heart
tissue_preservation Frozen
tissue_type Heart
type_status NA
voucher_or_tissue_number DDBD_533_Heart
wild_captive Wild
work_order 13002.0