
bpa-ausarg-illumina-fastq-350722-hh2jjbgxg
Data and Resources
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
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350722_AusARG_UNSW_HH2JJBGXG_CCA ... Access denied FASTQ
Additional Info
Field | Value |
---|---|
Geospatial Coverage | |
Resource Permissions | organization_member |
access_rights | Public |
ala_specimen_url | NA |
analysis_software | GenerateFASTQ |
analysis_software_version | GenerateFASTQ: 1.1.0.64 |
ancillary_notes | Dissected at Ucanberra | Arthur Georges |
associated_media | Photo 0239-0242 |
ausarg_project | Reference genome |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-948/ |
bioplatforms_dataset_id | 102.100.100/351721 |
bioplatforms_library_id | 102.100.100/350722 |
bioplatforms_sample_id | 102.100.100/349728 |
birth_date | |
ccg_jira_ticket | BPAOPS-948 |
cell_postion | |
certainty | Absolute |
class | Reptilia |
collection_date | 2018-03-20 |
collection_method | Noose |
collector | Nicola Kent |
collector_sample_id | RSP615 |
common_name | Eastern water dragon |
coord_uncertainty_metres | 100.0 |
country | Australia |
data_custodian | Celine Frere |
data_generated | True |
data_type | Illumina-fastq |
dataset_id | 102.100.100/351721 |
date_of_transfer | 4/8/20 |
date_of_transfer_to_archive | 25/08/2020 |
death_date | 2018-03-29 |
description | RNA-seq |
dna_treatment | |
download | |
experimental_design | Transcriptome in support of annotation |
facility | UNSW |
facility_sample_id | GEO8324A3 |
family | Agamidae |
file_count | |
flowcell_id | HH2JJBGXG |
flowcell_type | NextSeq v2 Highoutput |
folder_name | 20200803_UNSW_AusARG_UNSW_HH2JJBGXG |
genotypic_sex | Male |
genus | Physignathus |
habitat | Urban Park |
identified_by | Celine Frere | USC |
insert_size_range | 200_1000bp |
institution_name | University of the Sunshine Coast |
latitude | -27.462703 |
library_comments | input amount 1ug |
library_construction_protocol | TruSeq Stranded mRNA |
library_id | 102.100.100/350722 |
library_index_id | UDI0003 |
library_index_seq | CCAAGTCC-CGCAGACG |
library_location | Ramaciotti Centre for Genomics_UNSW |
library_ng_ul | 1.19 |
library_oligo_sequence | |
library_pcr_cycles | 12.0 |
library_pcr_reps | |
library_prep_date | |
library_prepared_by | Ramaciotti Centre for Genomics_UNSW |
library_status | Sequenced |
library_type | RNA Seq |
lifestage | Sub-adult |
location_text | Roma Street Parklands |
longitude | 153.018534 |
material_conc_ng_ul | NA |
material_extracted_by | Garvan |
material_extraction_date | |
material_extraction_method | NA |
material_extraction_type | RNA |
method_of_determination | Visual |
movie_length | |
n_libraries_pooled | 9.0 |
order | Squamata |
phenotypic_sex | Male |
phylum | Chordata |
prior_genetics | NA |
project_aim | Reference genome |
sample_custodian | Celine Frere |
sample_id | 102.100.100/349728 |
sample_quality | Good |
scientific_name | Physignathus lesueurii |
sequencing_facility | Ramaciotti |
sequencing_platform | NextSeq500 |
source_population | Brisbane City |
species | lesueurii |
specimen_id | Phleu_18_02 |
specimen_id_description | UCanberra collection |
state_or_region | Queensland |
subspecies | lesueurii |
taxon_id | 103694.0 |
taxonomic_group | Lizard |
ticket | BPAOPS-948 |
tissue_collection | UC<Aus> |
tissue_number | Phleu_18_01_Testes |
tissue_preservation | Frozen |
tissue_type | Testes |
type_status | unknown |
voucher_or_tissue_number | Phleu_18_01_Testes |
wild_captive | Wild |
work_order | 13002.0 |