JSON

bpa-ausarg-illumina-fastq-350721-hh2jjbgxg

Physignathus lesueurii, Reference genome, NextSeq500 RNA Seq, Australia

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
access_rights Public
ala_specimen_url NA
analysis_software GenerateFASTQ
analysis_software_version GenerateFASTQ: 1.1.0.64
ancillary_notes Dissected at Ucanberra | Arthur Georges
associated_media Photo 0239-0242
ausarg_project Reference genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-948/
bioplatforms_dataset_id 102.100.100/351721
bioplatforms_library_id 102.100.100/350721
bioplatforms_sample_id 102.100.100/349727
birth_date
ccg_jira_ticket BPAOPS-948
cell_postion
certainty Absolute
class Reptilia
collection_date 2018-03-19
collection_method Noose
collector Nicola Kent
collector_sample_id RSP615
common_name Eastern water dragon
coord_uncertainty_metres 100.0
country Australia
data_custodian Celine Frere
data_generated True
data_type Illumina FASTQ
dataset_id 102.100.100/351721
date_of_transfer 4/8/20
date_of_transfer_to_archive 25/08/2020
death_date 2018-03-29
description RNA-seq
dna_treatment
download
experimental_design Transcriptome in support of annotation
facility Ramaciotti Centre for Genomics- UNSW
facility_sample_id GEO8324A2
family Agamidae
file_count
flowcell_id HH2JJBGXG
flowcell_type NextSeq v2 Highoutput
folder_name 20200803_UNSW_AusARG_UNSW_HH2JJBGXG
genotypic_sex Male
genus Physignathus
habitat Urban Park
identified_by Celine Frere | USC
insert_size_range 200_1000bp
institution_name University of the Sunshine Coast
latitude -27.462703
library_comments input amount 1ug
library_construction_protocol TruSeq Stranded mRNA
library_id 102.100.100/350721
library_index_id UDI0002
library_index_seq GGTTATAA-GATATCGA
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 6.49
library_oligo_sequence
library_pcr_cycles 12.0
library_pcr_reps
library_prep_date
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_status Sequenced
library_type RNA Seq
lifestage Sub-adult
location_text Roma Street Parklands
longitude 153.018534
material_conc_ng_ul NA
material_extracted_by Garvan
material_extraction_date
material_extraction_method NA
material_extraction_type RNA
method_of_determination Visual
movie_length
n_libraries_pooled 9.0
order Squamata
phenotypic_sex Male
phylum Chordata
prior_genetics NA
project_aim Reference genome
resource_permissions organization_member
sample_custodian Celine Frere
sample_id 102.100.100/349727
sample_quality Good
scientific_name Physignathus lesueurii
sequencing_facility Ramaciotti
sequencing_platform NextSeq500
source_population Brisbane City
species lesueurii
specimen_id Phleu_18_02
specimen_id_description UCanberra collection
state_or_region Queensland
subspecies lesueurii
taxon_id 103694.0
taxonomic_group Lizard
ticket BPAOPS-948
tissue_collection UC<Aus>
tissue_number Phleu_18_01_Heart
tissue_preservation Frozen
tissue_type Heart
type_status unknown
voucher_or_tissue_number Phleu_18_01_Heart
wild_captive Wild
work_order 13002.0