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ARP Transcriptomics Hiseq 51164

ARP Transcriptomics Hiseq Raw Data: Streptococcus pyogenes PS003 Pooled sera Replicate 1

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-transcriptomics
additional_notes
analytical_platform HiSeq
archive_ingestion_date
archive_ingestion_dates
barcode_tag AGTACTCC-AACCTGTT
casava_version bcl2fastq v2.20.0.422
concentration_ng_per_ul
contact_researcher Mark Walker
contextual_data_submission_date 2018-04-05
culture_collection_date 2010-07-05
culture_collection_id SP474
data_generated True
data_type Main dataset
either_260_280
facility AGRF
flow_cell_ids CCRF1ANXX
gram_stain POS
growth_condition_growth_phase N/A
growth_condition_media Pooled sera
growth_condition_od600_reading N/A
growth_condition_temperature 37.0
growth_condition_time_(h) 2 hrs exposure to sera
growth_media Pooled sera
host_age NA
host_description NA
host_disease_outcome Puerperal sepsis
host_dob NA
host_location New South Wales, Australia
host_sex F
isolation_source Vaginal swab
key_virulence_genes SpeB +ve, PCR +ve for GBS genes (vaginal colonisation)
library_construction_protocol Truseq Stranded mRNA
omics Transcriptomics
publication_reference J Clin Micro 50:2224-2228 (2012)
quantification_method
replicate 1
sample 51515
sample_id 102.100.100/51164
sample_submission_date 2018-03-13
sample_type RNA
sequencer HiSeq 2500
serovar M77, unusual M type associated with peurperal sepsis
strain_description Isolated during suspected outbreak in NSW, Australia
strain_or_isolate PS003
taxon_or_organism Streptococcus pyogenes
ticket BPAOPS-664
volume_ul 34.0
work_order