ARP Transcriptomics Hiseq 50900

ARP Transcriptomics Hiseq Raw Data: Escherichia coli MS14386 Pooled sera Replicate 6

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-transcriptomics
additional_notes
analytical_platform HiSeq
archive_ingestion_date
archive_ingestion_dates 12/02/2018
barcode_tag AGTACTCC-AACCTGTT
casava_version bcl2fastq v2.20.0.422
concentration_ng_per_ul
contact_researcher Steven Djordjevic
contextual_data_submission_date 2017-11-14
culture_collection_date
culture_collection_id E. coli strain 2013-13
data_generated True
data_type Main dataset
either_260_280
facility AGRF
flow_cell_ids CC24MANXX
gram_stain NEG
growth_condition_growth_phase N/A
growth_condition_media Pooled sera
growth_condition_od600_reading N/A
growth_condition_temperature 37.0
growth_condition_time_(h) 2 hrs exposure to sera
growth_media Pooled sera
host_age
host_description
host_disease_outcome
host_dob
host_location New South Wales, Australia (Sydney Adventist Hospital)
host_sex
isolation_source Blood
key_virulence_genes Carries a copper resistance operon and hlyE. Putative resistance to five antibiotic classes. Phylogroup B2
library_construction_protocol Truseq Stranded mRNA
omics Transcriptomics
publication_reference
quantification_method
replicate 6
sample 51515
sample_id 102.100.100/50900
sample_submission_date 2017-11-13
sample_type RNA
sequencer HiSeq 2500
serovar
strain_description ST224
strain_or_isolate MS14386
taxon_or_organism Escherichia coli
ticket BPAOPS-511
volume_ul 34.0
work_order