20190514_Analysed_data_Spneumoniae_Transcriptomics_BPA_Sepsis_Monash_20190514

ARP transcriptomics HiSeq analysed data: Streptococcus pneumoniae 4559, Streptococcus pneumoniae 4559, Streptococcus pneumoniae 4559, Streptococcus pneumoniae 947, Streptococcus pneumoniae 947, Streptococcus pneumoniae 947, Streptococcus pneumoniae 180/2, Streptococcus pneumoniae 180/2, Streptococcus pneumoniae 180/2, Streptococcus pneumoniae 180/15, Streptococcus pneumoniae 180/15, Streptococcus pneumoniae 180/15, Streptococcus pneumoniae 4496, Streptococcus pneumoniae 4496, Streptococcus pneumoniae 4496, Pooled sera, RPMI + galactose, RPMI + glucose

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type transcriptomics-analysed
analytical_platform HiSeq
approach_used Aligned with bwa version 0.7.12 with default settings. Reads quantified with featureCounts in subread version 1.5.1. Diferentially expressed gene tables and Glimma plots generated by voom transform with edgeR_3.16.5, Glimma_1.2.1, limma_3.30.13 with R version 3.2.2.
archive_ingestion_date 2019-10-25
base_url https://downloads-qcif.bioplatforms.com/bpa/sepsis/transcriptomics/analysed/agrf/BPAOPS-867/
contextual_data_submission_date 2017-10-31
data_generated True
data_type BAM, counts, DEG results (zip, multiple)
dataset_url https://downloads-qcif.bioplatforms.com/bpa/sepsis/transcriptomics/analysed/agrf/BPAOPS-867/
date_of_transfer
date_of_transfer_to_archive 25/10/2019
description Transcriptomics Analysed Data - S.pneumoniae Main dataset
facility Monash University
facility_code agrf
file_count
folder_name 20190514_Analysed_data_Spneumoniae_Transcriptomics_BPA_Sepsis_Monash_20190514
growth_condition_temperature 37°C
growth_media Pooled sera, RPMI + galactose, RPMI + glucose
omics transcriptomics
sample_ids 102.100.100/50265, 102.100.100/50266, 102.100.100/50267, 102.100.100/50268, 102.100.100/50269, 102.100.100/50270, 102.100.100/50271, 102.100.100/50272, 102.100.100/50273, 102.100.100/50274, 102.100.100/50275, 102.100.100/50276, 102.100.100/50277, 102.100.100/50278, 102.100.100/50279, 102.100.100/50280, 102.100.100/50281, 102.100.100/50282, 102.100.100/50283, 102.100.100/50284, 102.100.100/50285, 102.100.100/50286, 102.100.100/50287, 102.100.100/50288, 102.100.100/50289, 102.100.100/50290, 102.100.100/50291, 102.100.100/50292, 102.100.100/50293, 102.100.100/50294, 102.100.100/50295, 102.100.100/50296, 102.100.100/50297, 102.100.100/50298, 102.100.100/50299, 102.100.100/50300, 102.100.100/50301, 102.100.100/50302, 102.100.100/50303, 102.100.100/50304, 102.100.100/50305, 102.100.100/50306, 102.100.100/50307, 102.100.100/50308, 102.100.100/50309, 102.100.100/50310, 102.100.100/50311, 102.100.100/50312, 102.100.100/50313, 102.100.100/50314, 102.100.100/50315, 102.100.100/50316, 102.100.100/50317, 102.100.100/50318, 102.100.100/50319, 102.100.100/50320, 102.100.100/50321, 102.100.100/50322, 102.100.100/50323, 102.100.100/50324, 102.100.100/50325, 102.100.100/50326, 102.100.100/50327, 102.100.100/50328, 102.100.100/50329, 102.100.100/50330, 102.100.100/50331, 102.100.100/50332, 102.100.100/50333, 102.100.100/50334, 102.100.100/50335, 102.100.100/50336, 102.100.100/50337, 102.100.100/50338, 102.100.100/50339, 102.100.100/50340, 102.100.100/50341, 102.100.100/50342, 102.100.100/50343, 102.100.100/50344, 102.100.100/50345, 102.100.100/50346, 102.100.100/50347, 102.100.100/50348, 102.100.100/50349, 102.100.100/50350, 102.100.100/50351, 102.100.100/50352, 102.100.100/50353, 102.100.100/50354
sample_submission_date
serovar
strain_or_isolate 180/15, 180/2, 4496, 4559, 947
taxon_or_organism Streptococcus pneumoniae
ticket BPAOPS-867
work_order