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ARP Metabolomics GCMS 50193

ARP Metabolomics GCMS Raw Data: Streptococcus pneumoniae 947 Pooled sera Replicate 2

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type metabolomics
acquisition_mode Negative Ion (45-600 mz: 2000 scan speed)
archive_ingestion_date 2018-07-12
contact_researcher James Paton/Claudia Trappetti
contextual_data_submission_date 31/10/17
culture_collection_date 1997-09-07
culture_collection_id
data_generated True
data_type Main dataset
facility MA
gc_column_type Agilent DB-5; 1um film thicknes; 0.250mm diameter; 30m length
gradient_time_min_flow 37 minutes method: starting temp 100°C with hold time of 4 minutes. Temperature ramped up by 10°C per minute for 22 minutes and held at 320°C for 11 minutes.
gram_stain POS
growth_media Pooled sera
host_age
host_description
host_disease_outcome
host_dob
host_location South Australia, Australia (Adelaide)
host_sex
isolation_source Ear
key_virulence_genes Unknown
mass_spectrometer Shimadzu TQ8040
omics Metabolomics
publication_reference Infect Immun. 83(12):4781-90 (2015)
raw_file_name 50193_Sep_MA_GCMS_947S-2-562-31337_Bio21-GC-QQQ-Shimadzu.qgd
replicate 2
sample_fractionation_extract_solvent Polar metabolite / Methanol:Water
sample_id 102.100.100/50193
sample_submission_date 31/10/17
serovar 14
strain_description ST15
strain_or_isolate 947
taxon_or_organism Streptococcus pneumoniae
ticket BPAOPS-630
work_order