JSON

Sepsis Genomics Miseq 25785

ARP Genomics Miseq Raw Data: Streptococcus pneumoniae 4496 THY broth Replicate 1

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysis_software_version 2.6.2.3
analytical_facility Ramaciotti
archive_ingestion_date 2016-08-18
contact_researcher James Paton/Richard Harvey
contextual_data_submission_date 2016-04-26
culture_collection_date 1988-06-07
culture_collection_id
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method Qiagen kit with 100/G genomic tip
facility RAMACIOTTI
gram_stain POS
growth_condition_media THY broth
growth_condition_notes THY broth (recommend using filtered not autoclaved broth as some of the strains don't seem to grow when media has been overheated)
growth_condition_temperature 37.0
growth_condition_time_(h) No shaking, grow daytime
growth_media THY broth
host_age
host_description
host_disease_outcome
host_dob
host_location Victoria, Australia (Melbourne)
host_sex M
insert_size_range 150-2000
isolation_source Blood
key_virulence_genes Low hemolytic Ply
library_construction_protocol Nextera XT
omics Genomics
publication_reference Infect. Immun. 79(1):4122-30 (2011)
replicate 1
sample_id 102.100.100/25785
sample_submission_date 2016-04-26
sequencer MiSeq
serovar 1
strain_description Highly virulent in animal models (ST3018)
strain_or_isolate 4496
taxon_or_organism Streptococcus pneumoniae
ticket BRLOPS-847
work_order Work order 3