JSON

Sepsis Genomics Miseq 25768

ARP Genomics Miseq Raw Data: Escherichia coli MS14386 Luria broth Replicate 1

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysis_software_version 2.6.1.1
analytical_facility Ramaciotti
archive_ingestion_date 2016-11-30
contact_researcher Steven Djordjevic
contextual_data_submission_date 2016-07-20
culture_collection_date
culture_collection_id E. coli strain 2013-13
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method MoBio genomic DNA extraction kit
facility RAMACIOTTI
gram_stain NEG
growth_condition_media Luria broth
growth_condition_notes
growth_condition_temperature 37.0
growth_condition_time_(h) Overnight growth
growth_media Luria broth
host_age
host_description
host_disease_outcome
host_dob
host_location New South Wales, Australia (Sydney Adventist Hospital)
host_sex
insert_size_range 150-2000
isolation_source Blood
key_virulence_genes Carries a copper resistance operon and hlyE. Putative resistance to five antibiotic classes. Phylogroup B2
library_construction_protocol Nextera XT
omics Genomics
publication_reference
replicate 1
sample_id 102.100.100/25768
sample_submission_date 2016-07-16
sequencer MiSeq
serovar
strain_description ST224
strain_or_isolate MS14386
taxon_or_organism Escherichia coli
ticket BPAOPS-61
work_order Work order 2