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Sepsis Genomics Miseq 25747

ARP Genomics Miseq Raw Data: Staphylococcus aureus BPH2900 BHI broth Replicate 1

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member
Sequence Data Type illumina-shortread
analysis_software_version 2.6.2.3
analytical_facility Ramaciotti
archive_ingestion_date 2016-08-18
contact_researcher Tim Stinear
contextual_data_submission_date 2016-05-07
culture_collection_date 2008-04-20
culture_collection_id
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method Phenol-chloroform; Phase-lock gel tubes
facility RAMACIOTTI
gram_stain POS
growth_condition_media BHI broth
growth_condition_notes Horse blood agar for streaking (from glycerol) then overnight in BHI broth
growth_condition_temperature 37.0
growth_condition_time_(h) Overnight growth
growth_media BHI broth
host_age 85
host_description
host_disease_outcome Bacteraemia
host_dob
host_location Perth, Australia
host_sex M
insert_size_range 150-2000
isolation_source Blood culture
key_virulence_genes
library_construction_protocol Nextera XT
omics Genomics
publication_reference Holmes, N. et al., - unpublished
replicate 1
sample_id 102.100.100/25747
sample_submission_date 2016-05-07
sequencer MiSeq
serovar
strain_description ST22 MRSA
strain_or_isolate BPH2900
taxon_or_organism Staphylococcus aureus
ticket BRLOPS-847
work_order Work order 4