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Australian Microbiome Metagenomics Novaseq 102.100.100/141336

MGE

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Sequence Data Type illumina-shortread
absorbance_260_230_ratio 0.064
absorbance_260_280_ratio 1.842
absorbance_260_280_ratio_submitter
absorbance_260_280_ratio_submitter_meth
acid_volatile_sulphides
acid_volatile_sulphides_meth
agrochem_addition
alkalinity (µmol/kg)
alkalinity_meth
allo (mg/m3)
allo_meth
alpha_beta_car (mg/m3)
alpha_beta_car_meth
am_environment
ammonium (µmol/L)
ammonium_meth
ammonium_nitrogen_wt (mg/kg)
ammonium_nitrogen_wt_meth
anth (mg/m3)
anth_meth
antimony (ppm)
antimony_meth
archive_ingestion_date 2021-06-09
arsenic (µg/kg)
arsenic_meth
asta (mg/m3)
asta_meth
average_host_abundance (%)
average_host_abundance_meth
barium (ppm)
barium_meth
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1080/20210604_AM_MGE_UNSW_H72YYDSX2/
beta_beta_car (mg/m3)
beta_beta_car_meth
beta_epi_car
beta_epi_car_meth
biotic_relationship
bleaching
boron_hot_cacl2 (mg/kg)
boron_hot_cacl2_meth
but_fuco (mg/m3)
but_fuco_meth
cadmium (µg/kg)
cadmium_meth
cantha (mg/m3)
cantha_meth
carbonate_bicarbonate (mg/L)
carbonate_bicarbonate_meth
cation_exchange_capacity (meq/100g)
cation_exchange_capacity_meth
cerium (ppm)
cerium_meth
cesium (ppm)
cesium_meth
chloride (mg/L)
chloride_meth
chlorophyll_a (mg/m3)
chlorophyll_a_meth
chlorophyll_b (mg/m3)
chlorophyll_b_meth
chlorophyll_c1 (mg/m3)
chlorophyll_c1_meth
chlorophyll_c1c2 (mg/m3)
chlorophyll_c1c2_meth
chlorophyll_c2 (mg/m3)
chlorophyll_c2_meth
chlorophyll_c3 (mg/m3)
chlorophyll_c3_meth
chlorophyll_ctd (mg/m3)
chlorophyll_ctd_meth
chromium (µg/kg)
chromium_meth
citation
clay (%)
clay_meth
coarse_sand (%)
coarse_sand_meth
coastal_id
cobalt (µg/kg)
cobalt_meth
collection_date
color
color_meth
conductivity (dS/m)
conductivity_aqueous (S/m)
conductivity_aqueous_meth
conductivity_meth
conversion_software bcl2fastq2
conversion_software_version v2.20
cphlide_a (mg/m3)
cphlide_a_meth
crop_rotation_1yr_since_present
crop_rotation_2yrs_since_present
crop_rotation_3yrs_since_present
crop_rotation_4yrs_since_present
crop_rotation_5yrs_since_present
data_generated 2021-06-09
data_type MGE
database_schema_definitions_url
dataset_url
date_of_transfer 2021-06-08
date_since_change_in_land_use
days_since_planting (days)
density (kg/m3)
density_meth
depth (m)
depth_lower (m)
depth_upper (m)
description NovaSeq data package
diadchr (mg/m3)
diadchr_meth
diadino (mg/m3)
diadino_meth
diato (mg/m3)
diato_meth
dino (mg/m3)
dino_meth
dna_concentration 1.775
dna_concentration_method picogreen
dna_concentration_submitter (ng/µL)
dna_concentration_submitter_meth
dtpa_copper (mg/kg)
dtpa_copper_meth
dtpa_iron (mg/kg)
dtpa_iron_meth
dtpa_manganese (mg/kg)
dtpa_manganese_meth
dtpa_zinc (mg/kg)
dtpa_zinc_meth
dv_cphl_a (mg/m3)
dv_cphl_a_and_cphl_a (mg/m3)
dv_cphl_a_and_cphl_a_meth
dv_cphl_a_meth
dv_cphl_b (mg/m3)
dv_cphl_b_and_cphl_b (mg/m3)
dv_cphl_b_and_cphl_b_meth
dv_cphl_b_meth
dysprosium (ppm)
dysprosium_meth
echin (mg/m3)
echin_meth
elev (m)
env_broad_scale
env_local_scale
env_medium
erbium (ppm)
erbium_meth
europium (ppm)
europium_meth
exc_aluminium (meq/100g)
exc_aluminium_meth
exc_calcium (meq/100g)
exc_calcium_meth
exc_magnesium (meq/100g)
exc_magnesium_meth
exc_potassium (meq/100g)
exc_potassium_meth
exc_sodium (meq/100g)
exc_sodium_meth
extreme_event
facility_code ramaciotti
fine_sand (%)
fine_sand_meth
fine_sediment (%)
fine_sediment_meth
fire
fire_intensity_if_known
flooding
fluor (AU)
fluor_meth
folder_name 20210608_AM_MGE_UNSW_H72YYDSX2
fouling
fouling_organisms
fresh_weight (g)
fresh_weight_meth
fuco (mg/m3)
fuco_meth
funding_agency
gadolinium (ppm)
gadolinium_meth
gallium (ppm)
gallium_meth
general_env_feature
geo_loc_name
germanium (ppm)
germanium_meth
gold (ppm)
gold_meth
gravel (%)
gravel_percent_meth
grazing (%)
grazing_number
gyro (mg/m3)
gyro_meth
hafnium (ppm)
hafnium_meth
hex_fuco (mg/m3)
hex_fuco_meth
holmium (ppm)
holmium_meth
horizon
host_abundance (individuals/m2)
host_abundance_mean (individuals/m2)
host_abundance_seaweed_mean (individuals/m2)
host_associated_microbiome_zone
host_species_variety
host_state
host_type
icp_te_boron (mg/L)
icp_te_boron_meth
icp_te_calcium (mg/L)
icp_te_calcium_meth
icp_te_copper (mg/L)
icp_te_copper_meth
icp_te_iron (mg/L)
icp_te_iron_meth
icp_te_manganese (mg/L)
icp_te_manganese_meth
icp_te_phosphorus (mg/L)
icp_te_phosphorus_meth
icp_te_sulfur (mg/L)
icp_te_sulfur_meth
icp_te_zinc (mg/L)
icp_te_zinc_meth
immediate_previous_land_use
imos_site_code
information
inorganic_fraction (mg/L)
inorganic_fraction_meth
insert_size_range 350-500
iridium (ppm)
iridium_meth
keto_hex_fuco (mg/m3)
keto_hex_fuco_meth
lanthanum (ppm)
lanthanum_meth
lat_lon (decimal_degrees)
latitude (decimal_degrees)
lead (µg/kg)
lead_meth
length (cm)
library_construction_protocol Illumina DNA Prep
light_intensity (lux)
light_intensity_bottom (µmol/m2/s)
light_intensity_bottom_meth
light_intensity_meadow (µmol/m2/s)
light_intensity_meadow_meth
light_intensity_meth
light_intensity_surface (µmol/m2/s)
light_intensity_surface_meth
local_class
local_class_meth
longitude (decimal_degrees)
lut (mg/m3)
lut_meth
lutetium (ppm)
lutetium_meth
lyco (mg/m3)
lyco_meth
magnesium (mg/L)
magnesium_meth
mg_dvp (mg/m3)
mg_dvp_meth
microbial_abundance (cells/mL)
microbial_abundance_meth
microbial_biomass
microbial_biomass_meth
molybdenum (µg/kg)
molybdenum_meth
mud
mud_meth
myxo (mg/m3)
myxo_meth
neo (mg/m3)
neo_meth
neodymium (ppm)
neodymium_meth
nickel (ppm)
nickel_meth
niobium_columbium (ppm)
niobium_columbium_meth
nitrate (µmol/L)
nitrate_meth
nitrate_nitrite (µmol/L)
nitrate_nitrite_meth
nitrate_nitrogen (mg/kg)
nitrate_nitrogen_meth
nitrite (µmol/L)
nitrite_meth
npic (mg/L)
npic_meth
npoc (mg/L)
npoc_meth
nrs_sample_code
nrs_trip_code
nucl_acid_ext
number_of_raw_reads 46745548.0
number_pcr_cycle 5.0
omics metagenomics
org_matter (%)
org_matter_meth
organic_carbon (%)
organic_carbon_meth
organic_fraction (mg/L)
organic_fraction_meth
osmium (ppm)
osmium_meth
oxygen (µmol/L)
oxygen_ctd_vol (mL/L)
oxygen_ctd_vol_meth
oxygen_ctd_wt (µmol/kg)
oxygen_ctd_wt_meth
oxygen_meth
palladium (ppm)
palladium_meth
pam_fluorometer
pam_fluorometer_meth
par (µmol/m2/s)
par_meth
part_org_carb (µmol/L)
part_org_carb_meth
perid (mg/m3)
perid_meth
ph
ph_meth
ph_solid_h2o
ph_solid_h2o_meth
phide_a (mg/m3)
phide_a_meth
phosphate (µmol/L)
phosphate_meth
phosphorus_colwell (mg/kg)
phosphorus_colwell_meth
phytin_a (mg/m3)
phytin_a_meth
phytin_b (mg/m3)
phytin_b_meth
picoeukaryotes (cells/mL)
picoeukaryotes_meth
plant_id
plant_stage
plant_stage_meth
platinum (ppm)
platinum_meth
pn (µmol/L)
pn_meth
potassium (mg/L)
potassium_colwell (mg/kg)
potassium_colwell_meth
potassium_meth
pras (mg/m3)
pras_meth
praseodymium (ppm)
praseodymium_meth
pres_rel (dbar)
pres_rel_meth
prochlorococcus (cells/mL)
prochlorococcus_meth
profile_position
pyrophide_a (mg/m3)
pyrophide_a_meth
pyrophytin_a (mg/m3)
pyrophytin_a_meth
rhodium (ppm)
rhodium_meth
root_length (cm)
root_length_meth
rubidium (ppm)
rubidium_meth
ruthenium (ppm)
ruthenium_meth
salinity (PSU)
salinity_lab (PSU)
salinity_lab_meth
salinity_meth
samarium (ppm)
samarium_meth
samp_collect_device
samp_mat_process
samp_size (L)
samp_vol_we_dna_ext (L)
sample_attribution
sample_database_file
sample_id 102.100.100/141336
sample_integrity_warnings
sample_metadata_ingest_date
sample_metadata_ingest_file
sample_metadata_update_history
sample_site_location_description
sample_submission_date 2021-06-08
sample_submitter
sample_type
sample_volume_notes
sand (%)
sand_meth
scandium (ppm)
scandium_meth
secchi_depth (m)
secchi_depth_meth
sediment_grain_size (%)
sediment_grain_size_fract (%)
sediment_grain_size_fract_meth
sediment_grain_size_meth
sediment_porewater_h4sio4 (µmol/L)
sediment_porewater_h4sio4_meth
sediment_porewater_nh4 (µmol/L)
sediment_porewater_nh4_meth
sediment_porewater_no2 (µmol/L)
sediment_porewater_no2_meth
sediment_porewater_no3 (µmol/L)
sediment_porewater_no3_meth
sediment_porewater_po43 (µmol/L)
sediment_porewater_po43_meth
sedimentation_rate (g/cm2/yr)
sedimentation_rate_meth
selenium (µg/kg)
selenium_meth
sequencer NovaSeq 6000
shoot_length (cm)
shoot_length_meth
silicate (µmol/L)
silicate_meth
silt (%)
silt_meth
silver (ppm)
silver_meth
sio2 (µmol/L)
sio2_meth
slope_aspect (direction_or_degrees)
slope_aspect_meth
slope_gradient (%)
slope_gradient_meth
sodium (mg/L)
sodium_meth
source_mat_id
specific_host
store_cond
strontium (ppm)
strontium_meth
sulphur (mg/kg)
sulphur_meth
synecochoccus (cells/mL)
synecochoccus_meth
tantalum (ppm)
tantalum_meth
temp (degC)
temp_meth
terbium (ppm)
terbium_meth
texture
texture_meth
thorium (ppm)
thorium_meth
thulium (ppm)
thulium_meth
ticket BPAOPS-1080
tillage
tin (ppm)
tin_meth
tot_carb (%)
tot_carb_meth
tot_depth_water_col (m)
tot_depth_water_meth
tot_n_meth
tot_nitro (%)
tot_org_c_meth
tot_org_carb
tot_phosp (%)
tot_phosp_meth
total_co2 (µmol/kg)
total_co2_meth
total_inorganic_carbon (%)
total_inorganic_carbon_meth
total_nitrogen (mg/kg)
total_nitrogen_meth
total_phosphorous (mg/kg)
total_phosphorous_meth
touching_organisms
transmittance (%)
transmittance_meth
tss (mg/L)
tss_meth
tungsten (ppm)
tungsten_meth
turbidity (NTU_or_FTU)
turbidity_meth
uranium (ppm)
uranium_meth
url
utc_date_sampled
utc_time_sampled
vanadium (ppm)
vanadium_meth
vegetation_dom_grasses (%)
vegetation_dom_shrubs (%)
vegetation_dom_trees (%)
vegetation_total_cover (%)
vegetation_type
viola (mg/m3)
viola_meth
voyage_code
voyage_survey_link
water_content (%)
water_content_soil_meth
water_holding_capacity (g/cm3)
water_holding_capacity_meth
ytterbium (ppm)
ytterbium_meth
yttrium (ppm)
yttrium_meth
zea (mg/m3)
zea_meth
zirconium (ppm)
zirconium_meth
zooplankton_biomass (mg/m3)
zooplankton_biomass_meth