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Australian Microbiome Amplicons ITS 102.100.100/138509 J9FL8

Soil, 214A, Australia:Western Australia, ITS MiSeq

Data and Resources

Additional Info

Field Value
Geospatial Coverage
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
acid_volatile_sulphides
acid_volatile_sulphides_method
agrochemical_additions
allo (mg/m3)
allo_method
alpha_beta_car (mg/m3)
alpha_beta_car_method
ammonium (µmol/l)
ammonium_method (µmol_per_l)
ammonium_nitrogen
ammonium_nitrogen_method 2.1
ammonium_nitrogen_mg_per_kg (mg/kg) 1.0
ammonium_nitrogen_mg_per_kg_method
ammonium_nitrogen_mg_per_l (mg/l)
ammonium_nitrogen_mg_per_l_method
amplicon ITS
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3)
anth_method
antimony
antimony_method
arsenic (µg/kg)
arsenic_method
asta (mg/m3)
asta_method
australian_soil_classification_control_vocab_6
average_host_abundance (%)
barium
barium_method
base_amplicon_linkage
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-959/
beta_beta_car (mg/m3)
beta_beta_car_method
beta_epi_car (mg/m3)
beta_epi_car_method
bleaching (%)
boron_hot_cacl2 (mg/kg) 0.14
boron_hot_cacl2_method 2.1
bottle_number
bottom_depth
broad_land_use_major_head_control_vocab_2 rehabilitation
bulk_density_g_per_cm3_or (kg/m3)
bulk_density_method
but_fuco (mg/m3)
but_fuco_method
cadmium (µg/kg)
cadmium_method
cantha (mg/m3)
cantha_method
carbonate_bicarbonate (mg/l)
carbonate_bicarbonate_method
cation_exchange_capacity
cation_exchange_capacity_method
ccg_jira_ticket BPAOPS-959
cerium
cerium_method
cesium
cesium_method
chloride (mg/l)
chloride_method
chlorophyll_a (µg/l)
chlorophyll_a_method
chlorophyll_ctd (ug/l)
chlorophyll_ctd_method
chromium (µg/kg)
chromium_method
citation
clay (%) 3.85
clay_method 2.1
coarse_sand (%)
coarse_sand_method 2.1
coastal_id
cobalt (µg/kg)
cobalt_method
color_control_vocab_10 BRGR
comments 138509_ITS_J9FL8_TACTTCGC-ACGACGTG
conductivity (s/m)
conductivity_ds_per_m (ds/m) 0.01
conductivity_ds_per_m_method 2.1
conductivity_s_per_m_method
contextual_data_submission_date
cphl_a (mg/m3)
cphl_a_method
cphl_b (mg/m3)
cphl_b_method
cphl_c1 (mg/m3)
cphl_c1_method
cphl_c1c2 (mg/m3)
cphl_c1c2_method
cphl_c2 (mg/m3)
cphl_c2_method
cphl_c3 (mg/m3)
cphl_c3_method
cphlide_a (mg/m3)
cphlide_a_method
crop_rotation_1yr_since_present
crop_rotation_2yrs_since_present
crop_rotation_3yrs_since_present
crop_rotation_4yrs_since_present
crop_rotation_5yrs_since_present
current_land_use_controlled_vocab_2
data_type ITS
date_of_transfer 25/09/2020
date_of_transfer_to_archive 25/9/2020
date_since_change_in_land_use
density_ctd_density (kg/m3)
density_method
depth_lower (m) 0.3
depth_upper (m) 0.2
description
detailed_land_use_sub_head_control_vocab_2 rehabilitation
diadchr (mg/m3)
diadchr_method
diadino (mg/m3)
diadino_method
diato (mg/m3)
diato_method
dilution_used 2x
dino (mg/m3)
dino_method
download
dtpa_copper (mg/kg) 0.21
dtpa_copper_method 2.1
dtpa_iron (mg/kg) 18.8
dtpa_iron_method 2.1
dtpa_manganese (mg/kg) 1.22
dtpa_manganese_method 2.1
dtpa_zinc (mg/kg) 0.13
dtpa_zinc_method 2.1
dv_cphl_a (mg/m3)
dv_cphl_a_and_cphl_a (mg/m3)
dv_cphl_a_and_cphl_a_method
dv_cphl_a_method
dv_cphl_b (mg/m3)
dv_cphl_b_and_cphl_b (mg/m3)
dv_cphl_b_and_cphl_b_method
dv_cphl_b_method
dysprosium
dysprosium_method
echin (mg/m3)
echin_method
elevation (m) 89.0
env_material_control_vocab_0 Soil
environment
environment_controlled_vocab_a Free living
erbium
erbium_method
europium
europium_method
exc_aluminium (meq/100g) 0.08
exc_aluminium_method 2.1
exc_calcium (meq/100g) 0.37
exc_calcium_method 2.1
exc_magnesium (meq/100g) 0.1
exc_magnesium_method 2.1
exc_potassium (meq/100g) 0.02
exc_potassium_method 2.1
exc_sodium (meq/100g) 0.02
exc_sodium_method 2.1
extreme_events
facility
fao_soil_classification_control_vocab_7
file_count
fine_sand (%) 7.63
fine_sand_method 2.1
fine_sediment (%)
fine_sediment_method
fire
fire_intensity_if_known
flooding
flow_id J9FL8
fluorescence_au
fluorescence_method
folder_name 20200925_AM_ITS_UNSW_J9FL8
fouling (%)
fouling_organisms
fuco (mg/m3)
fuco_method
funding_agency DBCA/Industry
gadolinium
gadolinium_method
gallium
gallium_method
general_env_feature_control_vocab_3 Temperate
geo_loc_country_subregion Australia:Western Australia
geospatial_coverage
germanium
germanium_method
gold
gold_method
gravel (%) 0.0
gravel_percent_method 2.1
grazing (%)
grazing_number
gyro (mg/m3)
gyro_method
hafnium
hafnium_method
hex_fuco (mg/m3)
hex_fuco_method
holmium
holmium_method
horizon_control_vocab_1 A
host_abundance (individuals/m2)
host_abundance_mean (individuals/m2)
host_abundance_seaweed_mean (ind/m2)
host_associated_microbiome_zone_see_vocab_d
host_species
host_state
host_type_see_vocab_c
icp_te_boron (mg/l)
icp_te_boron_method
icp_te_calcium (mg/l)
icp_te_calcium_method
icp_te_copper (mg/l)
icp_te_copper_method
icp_te_iron (mg/l)
icp_te_iron_method
icp_te_magnesium (mg/l)
icp_te_magnesium_method
icp_te_manganese (mg/l)
icp_te_manganese_method
icp_te_phosphorus (mg/l)
icp_te_phosphorus_method
icp_te_potassium (mg/l)
icp_te_potassium_method
icp_te_sodium (mg/l)
icp_te_sodium_method
icp_te_sulfur (mg/l)
icp_te_sulfur_method
icp_te_zinc (mg/l)
icp_te_zinc_method
immediate_previous_land_use_control_vocab_2
imos_site_code
index TACTTCGC-ACGACGTG
information
inorganic_fraction (mg/l)
inorganic_fraction_method
iridium
iridium_method
keto_hex_fuco (mg/m3)
keto_hex_fuco_method
lanthanum
lanthanum_method
lat_raw
latitude_decimal_degrees -30.65989
lead (µg/kg)
lead_method
length_cm
light_intensity_bottom (µmol/m^2/s^-1)
light_intensity_bottom_method
light_intensity_lux
light_intensity_lux_method
light_intensity_meadow (µmol/m^2/s^-1)
light_intensity_meadow_method
light_intensity_surface (µmol/m^2/s^-1)
light_intensity_surface_method
lon_raw
longitude_decimal_degrees 115.41766
lut (mg/m3)
lut_method
lutetium
lutetium_method
lyco (mg/m3)
lyco_method
metals
metals_method
method_of_australian_soil_classification
method_of_fao_soil_classification
mg_dvp (mg/m3)
mg_dvp_method
microbial_abundance (cells/ml)
microbial_abundance_method
microbial_biomass
microbial_biomass_method
molybdenum
molybdenum_method
mud (%)
mud_method
neo (mg/m3)
neo_method
neodymium
neodymium_method
nickel
nickel_method
niobium_columbium
niobium_columbium_method
nitrate_nitrite (µmol/l)
nitrate_nitrite_method
nitrate_nitrogen (mg/kg) 1.0
nitrate_nitrogen_mg_per_kg_method 2.1
nitrite (µmol/l)
nitrite_method
no2 (µmol/l)
no2_method
npic (mg/l)
npic_method
npoc (mg/l)
npoc_method
nrs_sample_code
nrs_trip_code
omics Genomics
operation_cast_id
organic_carbon (%) 0.19
organic_carbon_percent_method 2.1
organic_fraction (mg/l)
organic_fraction_method
organic_matter_content_loi
organic_matter_content_method
osmium
osmium_method
oxygen (µmol/l)
oxygen_ctd (µmol_per_kg)
oxygen_ctd_method (µmol_per_kg)
oxygen_method (µmol_per_l)
oxygen_ml_per_l_ctd
oxygen_ml_per_l_method
palladium
palladium_method
pam_fluorometer_measurement
pam_fluorometer_measurement_method
pass_fail P
perid (mg/m3)
perid_method
ph_aqueous
ph_aqueous_method
ph_solid_cacl2 4.9
ph_solid_cacl2_method 2.1
ph_solid_h2o 6.3
ph_solid_h2o_method 2.1
phide_a (mg/m3)
phide_a_method
phosphate (µmol/l)
phosphate_method
phosphorus_colwell (mg/kg) 2.0
phosphorus_colwell_method 2.1
phytin_a (mg/m3)
phytin_a_method
phytin_b (mg/m3)
phytin_b_method
pigments
pigments_methods
platinum
platinum_method
pn (µmol/l)
pn_method
poc (µmol/l)
poc_method
porewater_ph
porewater_ph_method
potassium_colwell (mg/kg) 15.0
potassium_colwell_method 2.1
pras (mg/m3)
pras_method
praseodymium
praseodymium_method
pres_rel_dbar
pres_rel_method
profile_position_control_vocab_5
pyrophide_a (mg/m3)
pyrophide_a_method
pyrophytin_a (mg/m3)
pyrophytin_a_method
reads 264436.0
rhodium
rhodium_method
rubidium
rubidium_method
ruthenium
ruthenium_method
salinity_ctd_method
salinity_ctd_psu
salinity_lab_method
salinity_lab_psu
samarium
samarium_method
sample_attribution Siegy Krauss
sample_collection_device_method 1.1
sample_id 102.100.100/138509
sample_material_processing
sample_material_processing_method
sample_site_location_description 214A
sample_storage_method Frozen
sample_submitter Siegy Krauss
sample_type
sand (%) 96.14
sand_method 2.1
scandium
scandium_method
secchi_depth (m)
secchi_depth_method
sediment_porewater_h4sio4 (µmol/l)
sediment_porewater_h4sio4_method
sediment_porewater_nh4 (µmol/l)
sediment_porewater_nh4_method
sediment_porewater_no2 (µmol/l)
sediment_porewater_no2_method
sediment_porewater_no3 (µmol/l)
sediment_porewater_no3_method
sediment_porewater_po43 (µmol/l)
sediment_porewater_po43_method
sedimentation_rate (g/(cm2 x yr))
sedimentation_rate_method
selenium
selenium_method
sequencing_facility Ramaciotti
silicate (µmol/l)
silicate_method
silt (%) 0.01
silt_method 2.1
silver
silver_method
sio2 (µmol/l)
sio2_method
slope (%)
slope_aspect_direction_or_degrees (direction or degrees)
soil_moisture (%)
soil_moisture_method
strontium
strontium_method
sulphur (mg/kg) 0.6
sulphur_method 2.1
tantalum
tantalum_method
target ITS
temperature (its-90 deg c) 38.0
temperature_ctd (its-90 deg c)
temperature_ctd_method
temperature_method
terbium
terbium_method
texture 1.5
texture_method 2.1
thorium
thorium_method
thulium
thulium_method
ticket BPAOPS-959
tillage_control_vocab_9
time_sampled
tin
tin_method
toc
toc_method
total_alkalinity (µmol/kg)
total_alkalinity_method
total_carbon (%)
total_carbon_percent_method
total_co2 (µmol/kg)
total_co2_method
total_inorganic_carbon (%)
total_inorganic_carbon_percent_method
total_nitrogen
total_nitrogen_method
total_phosphorous (mg/kg)
total_phosphorous_method
total_phosphorous_mg_per_kg_method
total_phosphorous_percent (%)
touching_organisms
transmittance (%)
transmittance_method
tss (mg/l)
tss_method
tungsten_or_wolfram
tungsten_or_wolfram_method
turbidity (ntu)
turbidity_ctd (nephelometric_turbidity_units)
turbidity_ctd_method
turbidity_ntu_method
uranium
uranium_method
utc_date_sampled 2019-12-04
utc_time_sampled 04:30:00.000000
vanadium
vanadium_method
vegetation_dom_grasses (%)
vegetation_dom_shrubs (%)
vegetation_dom_trees (%)
vegetation_total_basal_area (m2_in_0p25ha)
vegetation_total_cover (%)
vegetation_type shrubland
vegetation_type_descriptive
viola (mg/m3)
viola_method
voyage_code
voyage_survey_link
water_depth (m)
water_holding_capacity
water_holding_capacity_method
ytterbium
ytterbium_method
yttrium
yttrium_method
zea (mg/m3)
zea_method
zirconium
zirconium_method