Wheat Pathogens Transcript Sample Information

Project Puccinia striiformis infected tissue
Sample Name DG11
Contact Scientist Diana Garnica and John Rathjen
Contact Scientist email diana.garnica@anu.edu.au
Institution The Australian National University
Species Pucciniastriiformisf.sptritici (Pst) and Triticumaestivum(Ta)
Sample Type RNA
RNA Source From pst, ungerminated spores, from ta healthy and infected leaves
Extraction Method RNAeasy Plant kit QIAGEN
Growth Protocol Wheat seedling were grown at 21C for two weeks, then infected with fungal spores and maintained in a wet chamber at 9C for 48h. Subsequently plants were moved to a growth chamber at 17C in 16/8 light cycle. Collection of infected tissue was done a different time points during the process mentioned above. Healthy tissue was collected from uninfected plants. Germinated spores were collected ~17 days after infection when the plant tissue is fully covered in spores.
Treatment Protocol Ungerminated spores of the pathogen are mixed with talk and sprayed onto wet wheat seedlings.
Experimental Design Three biological replicates from different time points along the infection were collected and sequenced (0 hai and6 dai). Only one sample 9 dai was collected s in the past we had sequenced two replicates. Also, three replicates of ungerminated spores were sequenced. Finally, one replicate of wheat leave tissue infiltrated with buffer and one replicate of wheat leave tissue infiltrated with spores extract were sequenced.
Note Wheat infiltrated with buffer
2 Related Sequence files available for BPA Sample ID
Filename MD5 Run Description
DG_11_CGTACG_L001_R2_001.fastq.gz 2dd0ca363963a267e17e18e540a20729 Run 186 for DG11
DG_11_CGTACG_L001_R1_001.fastq.gz d15b4f96afd01bdf48fa8cf069a3f9a6 Run 186 for DG11
You can use the URL list below with tools like wget or curl to fetch only the listed sequence files from the archive.