Wheat Pathogens Transcript Sample 102.100.100.14345 Information

Project Rhizoctonia infected and vegetative tissue - small RNA
Sample Name JA11
Contact Scientist Jonathan Anderson
Contact Scientist email
Institution CSIRO
Species Wheat and Rhizoctonia solani
Sample Type Small RNA
RNA Source Infected wheat roots
Extraction Method
Growth Protocol Moist vermiculite pre-infected with fungus, germinated seedlings planted to vermiculite, harvest at 2, 4, 7 and 10 days after planting. RNA-seq at 2 and 7 dpi. Additional plants left until 21 dpi to confirm infective conditions. Amount of fungal DNA in-planta also confirmed infection occurring from day 2.
Treatment Protocol Germinated seedlings planted into pre-infected vermiculite
Experimental Design 3 biological replicates for all samples. QPCR confirmation of wheat response and fungal gene expression prior to RNA-seq
Note 7 dpi Rs AG8-1 inoculated wheat roots rep 2
2 Related Sequence files available for BPA Sample ID 102.100.100.14345
Filename MD5 Run Description
JA_R11_GAGTGG_L002_R1_001.fastq.gz 966ef8ebfc15718964c4ae9174c2846b Run 119 for JA11
JA_R11_GAGTGG_L008_R1_001.fastq.gz 84dc72f0311ffbe14ec42d138fad9c29 Run 119 for JA11
You can use the URL list below with tools like wget or curl to fetch only the listed sequence files from the archive.

https://downloads-qcif.bioplatforms.com/bpa/wheat_pathogens_transcript/all/JA_R11_GAGTGG_L002_R1_001.fastq.gz
https://downloads-qcif.bioplatforms.com/bpa/wheat_pathogens_transcript/all/JA_R11_GAGTGG_L008_R1_001.fastq.gz