Australian Microbiome Amplicons 16S 102.100.100/138664 K3W7D
Dataset size is: 33.37 MiB
Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-02-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| absorbance_260_280_ratio_submitter | -9999.0 |
| alkalinity (μmol/kg) | -9999.0 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.83 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1174/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1174 |
| chlorophyll_a (mg/m3) | -9999.0 |
| chlorophyll_ctd (mg/m3) | -9999.0 |
| collection_date | 2020-12-30T12:25:00 |
| comments | 138664_16S_K3W7D_CAAGCATG-ACGACGTG |
| conductivity_aqueous (S/m) | -9999.0 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| date_of_transfer | 2021-11-26 |
| date_of_transfer_to_archive | 2021-11-29 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | -9999.0 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | K3W7D |
| fluor (AU) | -9999.0 |
| folder_name | 20211126_AM_16S_UNSW_K3W7D |
| funding_agency | UTS; CRC food agility; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ_00002797] |
| imos_site_code | CSTRP |
| index | CAAGCATG-ACGACGTG |
| lat_lon (decimal_degrees) | -34.0068 151.1921 |
| latitude (decimal_degrees) | -34.0068 |
| longitude (decimal_degrees) | 151.1921 |
| microbial_abundance (cells/mL) | 1496340.0 |
| microbial_abundance_meth | meth_2.2 |
| nitrate (μmol/L) | -9999.0 |
| nitrate_nitrite (μmol/L) | 0.2 |
| nitrate_nitrite_meth | meth_2.2 |
| nitrite (μmol/L) | 1e-10 |
| nitrite_meth | meth_2.2 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | -9999.0 |
| par (μmol/m2/s) | -9999.0 |
| part_org_carb (μmol/L) | -9999.0 |
| pass_fail | P |
| pcr_plate_name | HOL9762_AJA9824_16S1_SetG |
| ph | -9999.0 |
| phosphate (μmol/L) | 0.23 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 21687.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 6634.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 74497.0 |
| salinity (PSU) | -9999.0 |
| salinity_lab (PSU) | -9999.0 |
| samp_collect_device | meth_1.5.1 |
| samp_mat_process | meth_1.5.1 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_id | 102.100.100/138664 |
| sample_metadata_ingest_date | 2024-07-05 13:29:16 |
| sample_metadata_ingest_file | CoastalMAP_ALL_epasd_GOLDupdated05072024_FullREPLACE_xlsx |
| sample_site_location_description | Towra Point - Botany Bay |
| sample_submitter | Shauna Murray[Shauna.Murray@uts.edu.au;https://orcid.org/0000-0001-7096-1307] |
| sample_type | Coastal water |
| secchi_depth (m) | -9999.0 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 1.2 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/138664 |
| store_cond | meth_1.5.1 |
| synechococcus (cells/mL) | 34684.0 |
| synechococcus_meth | meth_2.2 |
| synonyms | TRP20201230_102.100.100/138664_2 |
| target | 16S |
| temp (degC) | 21.3 |
| temp_meth | -9999 |
| ticket | BPAOPS-1174 |
| tot_depth_water_col (m) | -9999.0 |
| tot_nitro (%) | -9999.0 |
| tot_phosp (%) | -9999.0 |
| transmittance (%) | -9999.0 |
| tss (mg/L) | -9999.0 |
| turbidity (NTU) | -9999.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138664 |
| utc_date_sampled | 2020-12-30 |
| utc_time_sampled | 12:25:00 |