Australian Microbiome Amplicons 16S 102.100.100/138651 K3W7Y
Dataset size is: 42.86 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
Access Control Date | 2022-02-24 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
Related Data | doi:10.25953/bh2s-3d51 |
absorbance_260_280_ratio_submitter | -9999.0 |
alkalinity (μmol/kg) | -9999.0 |
am_environment | Marine |
ammonium (μmol/L) | 0.59 |
ammonium_meth | meth_2.2 |
amplicon | 16S |
analysis_software | MiSeq Reporter |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1173/ |
bioplatforms_dataset_id | 102.100.100/401915 |
bioplatforms_project | Australian Microbiome Initiative (AM) |
bioplatforms_project_code | AM0001 |
biotic_relationship | Free-living |
ccg_jira_ticket | BPAOPS-1173 |
chlorophyll_a (mg/m3) | -9999.0 |
chlorophyll_ctd (mg/m3) | -9999.0 |
collection_date | 2020-11-05T12:50:00 |
comments | 138651_16S_K3W7Y_GTCAATTG-TCTACACT |
conductivity_aqueous (S/m) | -9999.0 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401915 |
date_of_transfer | 2021-11-26 |
date_of_transfer_to_archive | 2021-11-29 |
depth (m) | 2.0 |
depth_lower (m) | 2.0 |
depth_upper (m) | 2.0 |
description | MiSeq data package |
dilution_used | neat |
dna_concentration_submitter (ng/μL) | -9999.0 |
env_broad_scale | 7 Other |
env_local_scale | 7.1.3 Coastal water-intensive use |
env_medium | Sea water [ENVO_00002149] |
flow_id | K3W7Y |
fluor (AU) | -9999.0 |
folder_name | 20211126_AM_16S_UNSW_K3W7Y |
funding_agency | UTS; CRC food agility; CSIRO; IMOS |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ_00002797] |
imos_site_code | CSTRP |
index | GTCAATTG-TCTACACT |
lat_lon (decimal_degrees) | -34.0068 151.1921 |
latitude (decimal_degrees) | -34.0068 |
longitude (decimal_degrees) | 151.1921 |
microbial_abundance (cells/mL) | 2585020.0 |
microbial_abundance_meth | meth_2.2 |
nitrate (μmol/L) | -9999.0 |
nitrate_nitrite (μmol/L) | 0.2 |
nitrate_nitrite_meth | meth_2.2 |
nitrite (μmol/L) | 1e-10 |
nitrite_meth | meth_2.2 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
oxygen (μmol/L) | -9999.0 |
par (μmol/m2/s) | -9999.0 |
part_org_carb (μmol/L) | -9999.0 |
pass_fail | P |
pcr_plate_name | HOL9761_16S1_SetF |
ph | -9999.0 |
phosphate (μmol/L) | 0.23 |
phosphate_meth | meth_2.2 |
picoeukaryotes (cells/mL) | 19607.0 |
picoeukaryotes_meth | meth_2.2 |
prochlorococcus (cells/mL) | 1261.0 |
prochlorococcus_meth | meth_2.2 |
reads | 86359.0 |
salinity (PSU) | -9999.0 |
salinity_lab (PSU) | -9999.0 |
samp_collect_device | meth_1.5.1 |
samp_mat_process | meth_1.5.1 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_id | 102.100.100/138651 |
sample_metadata_ingest_date | 2024-07-05 13:29:16 |
sample_metadata_ingest_file | CoastalMAP_ALL_epasd_GOLDupdated05072024_FullREPLACE_xlsx |
sample_site_location_description | Towra Point - Botany Bay |
sample_submitter | Shauna Murray[Shauna.Murray@uts.edu.au;https://orcid.org/0000-0001-7096-1307] |
sample_type | Coastal water |
secchi_depth (m) | -9999.0 |
sequencing_facility | Ramaciotti |
silicate (μmol/L) | 0.9 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/138651 |
store_cond | meth_1.5.1 |
synechococcus (cells/mL) | 16770.0 |
synechococcus_meth | meth_2.2 |
synonyms | TRP20201105_102.100.100/138651_2 |
target | 16S |
temp (degC) | 18.5 |
temp_meth | -9999 |
ticket | BPAOPS-1173 |
tot_depth_water_col (m) | -9999.0 |
tot_nitro (%) | -9999.0 |
tot_phosp (%) | -9999.0 |
transmittance (%) | -9999.0 |
tss (mg/L) | -9999.0 |
turbidity (NTU) | -9999.0 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138651 |
utc_date_sampled | 2020-11-05 |
utc_time_sampled | 12:50:00 |